UFO07549.5prime Sequence
1122 bp (1007 high quality bases) assembled on 2011-07-06
> UFO07549.5prime
CAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCAATGTGGCC
CAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTCCACTGCAC
GCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTCGCCGGATG
TAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCAGGGTTCTG
GTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCGGCACCCAT
GAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCCCACTCGCC
ATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGCAGAGGCCG
GCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCCGGCTCCTC
CAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACATAACGCTGA
GCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCAGCGATATC
TTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGGGCGGGTCG
TGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGCCTACGATC
CGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCGCACAGCGC
AAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTCTTTACAGG
CGAGACCAGACCTCTGAGCGTCCGGCAGCTTTACACGGAGGCTGGTAAGG
AGCTGCCGGTGGCCACCGGAGCCACTGCGACTGCCCTCGCCTCCTTGGCG
CACTCGCAGTCGCTGATCCCGTCCCGTTCCATCTCCTTCAACGGTGAGGT
TCTGTCCAGCGATCACGAAGTTCTACAACTAAATGGATGCACGGAAACGG
AGGATCATCTGCTGTGCGTGTCGGACTTTGGCAATGCCAACCGCAAGCTG
CGCACGCGCATCGATGCCGAAATCGAGATCCGACTGCCCGCTGCCATTGA
AGGATTTGCCGAAGTTGACGTCAAGCGAAGGCGCTTGGGTGCATGTCCCC
TGTCCACCCGAATTGCATGCATCACGGTTGACATCTCGGGTGAACCACAT
TCGCTGGGCCAATCAGCGAAAT
UFO07549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gukh-RE | 6191 | CG31043-RE | 482..1556 | 9..1089 | 5045 | 98.2 | Plus |
| gukh-RC | 4011 | CG31043-RC | 482..1556 | 9..1089 | 5045 | 98.2 | Plus |
| gukh-RA | 6268 | CG31043-RA | 482..1556 | 9..1089 | 5045 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18984506..18985115 | 9..618 | 3035 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19008504..19008871 | 619..986 | 1795 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:05:00 has no hits.
UFO07549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:55 Download gff for
UFO07549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RC | 473..1473 | 1..1000 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:07 Download gff for
UFO07549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RA | 473..1473 | 1..1000 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:09 Download gff for
UFO07549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RA | 473..1473 | 1..1000 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:09 Download gff for
UFO07549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18984497..18985115 | 1..618 | 99 | -> | Plus |
| 3R | 19008504..19008871 | 619..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:07 Download gff for
UFO07549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14810219..14810837 | 1..618 | 99 | -> | Plus |
| arm_3R | 14834226..14834593 | 619..986 | 99 | -> | Plus |
