UFO07552.5prime Sequence
1136 bp (1015 high quality bases) assembled on 2011-07-06
> UFO07552.5prime
CAGTCGACATGTCTTCGAATAACCAGAGCAGCAGCGTTGCCCAGGCGGCA
ACAAGTGCCCGCACCGTCAGTGCCGGATCGGCGGAAGCCACAGATGCCAA
TAGTACCGCCTCGAACAACAACAATAATAGCAGCAGTACCGCTGCAGCGG
GCAACAACAGCGACAACAGCAGTCCCACCACTGGAACGGGCACAGGAGCG
AGCACTGGAAAGCTGCACGGCGGCCACACGGCAGTAAACACCAAGGAACG
GGTGGTGGACAGCGTTCCCTTCCCGCCCAGCCACAAGCTGACCTTGGCGG
AGGTGTTCGACCAACGCACCGGCAAGCCCAACCATGAGCTGCTCAAGCAG
CACTTCATTCTTGAGGGCAGAATCGAGGAGGCGCCCGCCCTGAAAATCAT
CCAGGACGGAGCCGCCCTGCTGCGTCAGGAGAAGACGATGATCGATATTG
AGGCGCCGGTGACGGTGTGCGGTGATATCCACGGCCAGTTCTACGACCTG
ATGAAGCTGTTCGAAGTGGGCGGCTCGCCCGCGAGCACCAAGTATCTGTT
CCTGGGCGACTACGTCGATCGGGGCTACTTCAGCATCGAGTGCGTCCTGT
ATTTGTGGTCGCTAAAGATCACCTATCCGCAGACGCTGTTCCTGCTGCGC
GGCAACCACGAGTGCCGGCACTTAACCGAGTACTTCACCTTCAAGCAGGA
GTGCAAGATCAAGTACTCGGAGCGCGTGTACGACGCCTGCATGGACGCAT
TCGACTGCCTGCCGCTGGCGGCGCTATGAACCAGCAGTTCCTCTGCGTGC
ACGGCGGTCTGTCGCCGGAGATACACGAGCTGGAGGACATCCCGGCGGCT
CGACCGCTTCAAGGAGCCGCCCGCCTTTGGCCCATGTGCGACCTGCTGTG
GTCCGATCCCCTTGAGGACTTTGGCAACGAGAAGAACTCGGACTTCTACA
CGCACACTCCGTGCGCGATGCTCGTACTTCTACAGCTACGCGGCCTGCTG
CGACTTCTGCAGAACACAACTGCTGTCGATCATCGGGCGCACGAGCGCAG
GACGTCGCTACGCATGTACCGCAAAGCCGACCACGGCCTCCCTCGCGATC
CCATCTTCCGGACACTTATCTCGAAGGTCACTACAG
UFO07552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp2B-14D-RB | 4551 | CG9842-RB | 609..1725 | 8..1108 | 5080 | 98 | Plus |
| Pp2B-14D-RC | 5390 | CG9842-RC | 609..1725 | 8..1108 | 5080 | 98 | Plus |
| Pp2B-14D-RA | 3253 | CG9842-RA | 609..1725 | 8..1108 | 5080 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16558364..16559408 | 1045..8 | 4755 | 98.8 | Minus |
| X | 23542271 | X | 16566963..16567772 | 1045..243 | 2560 | 90 | Minus |
| 3R | 32079331 | 3R | 31041633..31041875 | 348..590 | 435 | 78.6 | Plus |
| 3R | 32079331 | 3R | 31042512..31042635 | 879..1000 | 295 | 86.3 | Plus |
| 3R | 32079331 | 3R | 31042283..31042398 | 708..822 | 260 | 83.6 | Plus |
| X | 23542271 | X | 20422643..20422713 | 524..454 | 205 | 85.9 | Minus |
| 3R | 32079331 | 3R | 31041962..31042080 | 589..707 | 205 | 78.2 | Plus |
| 2L | 23513712 | 2L | 7830510..7830633 | 456..579 | 200 | 77.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6918 | 21..180 | 148 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1499..1588 | 85..174 | 142 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6868 | 12..181 | 141 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2509 | 16..204 | 139 | 57.9 | Plus |
UFO07552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:55 Download gff for
UFO07552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 606..1714 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:09 Download gff for
UFO07552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 610..1718 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:12 Download gff for
UFO07552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 603..1711 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:12 Download gff for
UFO07552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16558306..16559412 | 1..1096 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:09 Download gff for
UFO07552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16452339..16453445 | 1..1096 | 97 | | Minus |
