UFO07560.5prime Sequence
1130 bp (1010 high quality bases) assembled on 2011-07-06
> UFO07560.5prime
CAGTCGACATGCTTTTGAAATGCACTTGGCTATTGGTTTTGCTGCTGTCC
GTAATGGCAGGTGCCTTTGCCAGCAGCGGATGTCCTGCGGGATATAGTGC
CGAGAACAATCGGTGCACCATTGAGCGTCCTGTTCACGGCTCCTGTCCAC
CCGGATCCTCCTACAGCCTGAACATCAACAAGTGCGTCCACTCCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCAC
CGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGGCGGGCA
GATGTGAATAAAGGCCGGATAAACTTGTGCTTATTTTTCTTTACGGTCTT
TAAAAGGCCGTATATCCAGCTGACGGTCTGGTATAGGTACATTGGAGCAC
TGACTGAATGCTCAATGTTCTTTACGATGCATGGGATATATCACGGGTGG
ATATCCAGGTGATTTTTTTTTCCAGTTTAGCTTCTAGCTCCTTGAAGGAT
CTACTCGTAGGCTACTTACGAGTTAGATTC
UFO07560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6503-RB | 348 | CG6503-RB | 48..235 | 7..194 | 940 | 100 | Plus |
| CG6503-RC | 353 | CG6503-RC | 53..240 | 7..194 | 940 | 100 | Plus |
| CG6503-RA | 408 | CG6503-RA | 108..295 | 7..194 | 940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26424811..26424998 | 194..7 | 940 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 763..830 | 123 | 68.1 | Plus |
UFO07560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:58 Download gff for
UFO07560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6503-RA | 103..299 | 1..199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:17 Download gff for
UFO07560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6503-RA | 103..299 | 1..199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:18 Download gff for
UFO07560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6503-RA | 103..299 | 1..199 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:55:18 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:07:17 has no hits.
