UFO07563.5prime Sequence
1122 bp (1005 high quality bases) assembled on 2011-07-06
> UFO07563.5prime
CAGTCGACATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTGAGGTGGTC
AGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATCAACGCCGA
GTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGACAGAGCTGC
AGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCATGGAGGGC
ACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGCCGAAGAAC
CAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGGTAATTGTG
TGTCCTTAAACAATTTGCTGCGCTGCTGCAAGATGAGCATCTACGAGTTC
AAGACCAAAATTAAGCAGTGGTGCGACATGGCCAACCTGCCTCAGGAGTT
TGTCAACGAGATTGAGGATCTGGACCGCAAGTTCAGCATTACATTCATGC
TGCACAAGCGTTTCCGCATTATTATGGACATGATCTTCTCGTGCCCGCCC
AACGAGAAGAAGCACTCCAAGTACATTTCTCTGCATGGCAACCACGCCCA
CGGAAAGTGCTCGTACATCAAGCTGGACGACATCTGCTGGCGCCTGTTTC
TCTGCGCCAAGAACCAGAAGCCGAGCAACACCGTGGACCTGGTGACATCC
TACAATCTGATGATTTGCTGCATAGACCTGATATACAACAATGTGCTGGC
CGAGAAGCGCACCGATCTCATCAACCCCAAATTCGAGGGCCTGCCGAGCA
ACTGGACGGAGCTGGACTTTCGTCACAATCCGCACTGCATTTTGTCCAAC
TTCTGTGACATGACCGAGGAGGCTAAAGCCATGAAGGCCACCACTTTCCG
CCAGATCATGTCGAGCTTCTTTCAGCTTCGACCATCTACGGCAACAAGGA
CACTATGTTAGGCCTATTGCTAACGAAAACTTCGAGCGCACCTAAGTCCC
TCACATCAGCTACGAGCAGTACGTCTCAGCGTCGGCGATTCGACGAACGC
ATTCTGAGTGCTACGATGCGGGGAACACACTGCCCTCACGACAGTCCTGC
CGTCGCCGGTTACTCCGCTTACCGCAGGCAGAATCTGCTGGCGCAGCCGG
AATGCCTGCATAATGGATCGTT
UFO07563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 692..1797 | 6..1098 | 5085 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 799717..800069 | 875..523 | 1750 | 99.7 | Minus |
| X | 23542271 | X | 800596..800788 | 198..6 | 965 | 100 | Minus |
| X | 23542271 | X | 800128..800318 | 526..336 | 955 | 100 | Minus |
| X | 23542271 | X | 800378..800519 | 337..196 | 710 | 100 | Minus |
| X | 23542271 | X | 799482..799648 | 1038..880 | 440 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:05:38 has no hits.
UFO07563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:58 Download gff for
UFO07563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 666..1765 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:20 Download gff for
UFO07563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 688..1787 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:20 Download gff for
UFO07563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 688..1787 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:20 Download gff for
UFO07563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 799428..799647 | 881..1088 | 92 | <- | Minus |
| X | 799711..800065 | 527..880 | 99 | <- | Minus |
| X | 800128..800316 | 338..526 | 100 | <- | Minus |
| X | 800378..800517 | 198..337 | 100 | <- | Minus |
| X | 800597..800790 | 1..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:20 Download gff for
UFO07563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 693461..693680 | 881..1088 | 92 | <- | Minus |
| arm_X | 693744..694098 | 527..880 | 99 | <- | Minus |
| arm_X | 694161..694349 | 338..526 | 100 | <- | Minus |
| arm_X | 694411..694550 | 198..337 | 100 | <- | Minus |
| arm_X | 694630..694823 | 1..197 | 98 | | Minus |
