UFO07565.5prime Sequence
1138 bp (1007 high quality bases) assembled on 2011-07-06
> UFO07565.5prime
CAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCAGCAACTAC
GAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACCTCCTCCAC
GCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCTCATGCCCA
CGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTCGCTTCGCC
GTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGAACGCCTCC
GCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGACTTCGACA
TCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGATGCCAGGA
TCACGACCCTCCAGCGCTCCCGCAGAGCCAAATGCCAAGGCGGCCAAGAA
GGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGAAGGAGCAGT
CGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGGCGAGAAGG
AACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCACAGCGAGAA
GATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGGATCGCGGT
CCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCGTGCTCAAT
CAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCAACGATATT
CGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCAGAAGGAGA
AGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCAGCAGCACC
TACTCCGTTTCCGGCGGCACAGGCCCGGCCACGAGCTCGGCAGCAGGTGG
AGCAGAGGAGCGGCGGCAGCAGCAGACAGGCGCAGCGGGAGGAGCCGGTG
GTCTTATGAACTCCATGAAGTGCCATGCAGACTTTAGCCATCGCCAGCAT
CCCGCGTGACGATACGAGCGCCGACGCACCGCATCACGGCAAGAGCAGTA
CAAAGACGCAGTGCCATCGCATCAAGCAGCGACGCGCAGTATACCCACAC
GTGACGGCGGGTGCGTCAAACTCTTCCCACGTCGCCGATGAACAAGTCAT
GGATCTGTTCCGCATCGATCCAGCTCGGGTGGTCACAG
UFO07565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RA | 3614 | CG17299-RA | 611..1751 | 9..1128 | 5030 | 97.5 | Plus |
| SNF4Agamma-RB | 3348 | CG17299-RB | 440..1580 | 9..1128 | 5030 | 97.5 | Plus |
| SNF4Agamma-RF | 4769 | CG17299-RF | 2066..2906 | 309..1128 | 3530 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21178579..21179133 | 430..976 | 2380 | 98.2 | Plus |
| 3R | 32079331 | 3R | 21155233..21155388 | 154..309 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 21154927..21155075 | 9..157 | 730 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21178275..21178399 | 306..430 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:05:43 has no hits.
UFO07565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:59 Download gff for
UFO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1587 | 1..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:22 Download gff for
UFO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1587 | 1..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:22 Download gff for
UFO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1587 | 1..1138 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:22 Download gff for
UFO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21154923..21155071 | 1..153 | 97 | -> | Plus |
| 3R | 21155233..21155387 | 154..308 | 100 | -> | Plus |
| 3R | 21178278..21178399 | 309..430 | 100 | -> | Plus |
| 3R | 21178580..21179204 | 431..1039 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:22 Download gff for
UFO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16980645..16980793 | 1..153 | 97 | -> | Plus |
| arm_3R | 16980955..16981109 | 154..308 | 100 | -> | Plus |
| arm_3R | 17004000..17004121 | 309..430 | 100 | -> | Plus |
| arm_3R | 17004302..17004926 | 431..1039 | 96 | -> | Plus |
