UFO07567.5prime Sequence
1142 bp (1029 high quality bases) assembled on 2011-07-06
> UFO07567.5prime
CAGTCGACATGGTTAGGGAGAACAAGGCAGCGTGGAAGGCTCAGTACTTC
ATCAAGGTTGTGGAACTGTTCGATGAGTTCCCAAAGTGCTTCATCGTGGG
CGCCGACAACGTGGGCTCCAAGCAGATGCAGAACATCCGTACCAGCCTGC
GTGGACTGGCCGTCGTGCTTATGGGCAAGAACACCATGATGCGCAAGGCC
ATCCGCGGTCATCTGGAGAACAACCCGCAGCTGGAGAAGCTGCTACCCCA
CATCAAGGGCAACGTGGGATTCGTGTTCACCAAGGGCGATCTCGCCGAGG
TGCGCGACAAGCTGCTGGAGTCCAAGGTGCGCGCCCCCGCCCGTCCCGGC
GCTATTGCCCCTCTGCACGTCATCATCCCGGCGCAGAACACCGGCTTGGG
ACCCGAGAAGACCAGTTTCTTCCAGGCCCTGTCCATCCCGACCAAAATTT
CCAAGGGAACAATTGAAATCATCAACGATGTGCCCATCCTGAAGCCTGGC
GACAAGGTCGGCGCCTCCGAGGCGACACTGCTCAACATGTTGAACATCTC
GCCCTTCTCGTACGGTCTGATTGTCAACCAGGTCTACGACTCCGGCTCGA
TCTTTTCGCCGGAGATCCTGGACATCAAGCCCGAGGATCTGCGCGCCAAG
TTCCAACAGGGAGTGGCCAACTTGGCCGCCGTTTGTTTGTCCGTGGGCTA
CCCCACCATCGCCTCGGCCCCGCACAGCATTGCCAACGGATTCAAGAATC
TGCTGGCCATTGCTGCCACCACCGAGGTGGAGTTCAAGGAGGCGACCACC
ATCAAGGAGTACATCAAGGACCCCAGCAAGTTCGCCGCAGCTGCTTCGGC
TTCGGCTGCCCCCGCGGCCGGCGGAGCTACCGAGAAGAAGGAGGAGGCCA
GAGCCCGAGTCCGATCAGAGGAGGAGGACGATGATATGGGTTTCGGTCTG
TTCGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGTCATATCATATTCATATCATAATCATAATCACACTAGCCTAGGAGGAT
CTGGTCATGACTAGTGCTTGATTCTTCACCAATAAAAAACGCCGGGCGCA
CGGAGCGTTCGGACATTCCGAATGGAATCTTGAAGTCATTAC
UFO07567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-RB | 1328 | CG7490-RB | 203..1153 | 9..956 | 4680 | 99.7 | Plus |
| RpLP0-RA | 1211 | CG7490-RA | 86..1036 | 9..956 | 4680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22076415..22077312 | 62..956 | 4360 | 99.6 | Plus |
| 3L | 28110227 | 3L | 22076288..22076342 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:05:52 has no hits.
UFO07567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:01 Download gff for
UFO07567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 128..1092 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:26 Download gff for
UFO07567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 78..1042 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:27 Download gff for
UFO07567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-RA | 78..1042 | 1..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:27 Download gff for
UFO07567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22076280..22076341 | 1..62 | 93 | -> | Plus |
| 3L | 22076416..22077312 | 63..956 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:26 Download gff for
UFO07567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22069380..22069441 | 1..62 | 93 | -> | Plus |
| arm_3L | 22069516..22070412 | 63..956 | 99 | == | Plus |
