UFO07571.5prime Sequence
1133 bp (979 high quality bases) assembled on 2011-07-06
> UFO07571.5prime
CAGTCGACATGAGCAGACGACGGGCAATTACCATGTCGTTGGCTCCCCAT
CTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGCCTGGTTTT
GGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAATGGCTGCG
AGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCACGCTGGAC
GTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTGATCAAGAA
CAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGCGCAGCTCA
CTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGGAACGATCG
TTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCACAATAAGAT
TGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCATCAGTGTTT
TAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCACTTTTTCG
CCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGCATCAGCCA
CATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGTGCTCTATC
TGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCTTCCAGGCA
CTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTTATGACAAT
TCCCGGAGGAGCTTTCCAGGATCTCAAAGGATTAACCAGATTGGATCTGC
GCGGAGCTGGCTTGCACAACATCTCGGGAGATGCTCTCAAGGGTCTGGTG
TCCCTTCGCTTTTTGGATCTGTCAGATAATCGCCTCCCTGCGATACCCAC
AGCAGCTTTTCAGCGATTGGGACGCCTGGAACAGCTAAACATTGGCCAAA
TGACTTTGAGGTGATCTCCTCGGGCGCCTTTCGGGTCTTCGGGAGCTGAG
CACTTGGAACTGACAGGTGCCCAGCGACTGGAACGCGTGAAAGCGGTGCC
TTCAGTGAAACCACAAACCTGGAGCACCTTACCTCTCTCCAGTAACAAGC
AGTTGAACGAATTATTCTTCCATCCGCCCTTGGGGTGGCTTGCCCCATCT
TGGAGCCAGGTGTGCTGAGCAATTCAACATTGG
UFO07571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caps-RE | 4841 | CG11282-RE | 888..1978 | 9..1100 | 5165 | 98.6 | Plus |
| caps-RD | 4841 | CG11282-RD | 888..1978 | 9..1100 | 5165 | 98.6 | Plus |
| caps-RB | 4628 | CG11282-RB | 675..1765 | 9..1100 | 5165 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13275689..13276748 | 9..1065 | 4980 | 99.1 | Plus |
| 3L | 28110227 | 3L | 13115372..13115795 | 122..545 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:05:56 has no hits.
UFO07571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:01 Download gff for
UFO07571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 672..1785 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:29 Download gff for
UFO07571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RA | 882..1995 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:28 Download gff for
UFO07571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 669..1782 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:28 Download gff for
UFO07571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13275683..13276796 | 1..1118 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:29 Download gff for
UFO07571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13268783..13269896 | 1..1118 | 97 | | Plus |
