UFO07572.5prime Sequence
1120 bp (1023 high quality bases) assembled on 2011-07-06
> UFO07572.5prime
CAGTCGACATGGCCGCGACCTCGTACATGACGCCGCCGAGCGGTGATCTG
GACATGGCCCTCGGAGGCGGTGGCTATCACACCTCGTCGCCGCGCTCGGC
GGCTGATGCCGGTGAAATGAAGTACATGCAGCACCATCATCATCATCATG
CCGCTGCCGCGGCAGCTGCCCACCATCAGTTGCCCTCGTCGCCATCGCCC
AATGGCCAGGGCAATGGTGGCGGACTTGGATTGGGTTCCGGTTCCGGGTT
GGGCTCATGGAGTGCCCTCCATCCGGATCCGTGGATGCAAACCCATCATA
CGCACCATCTGCCCGCCGCCGCTGCCGTTGCCTCGGCCGCTGATACCGTC
AAGCAGGAGATGTCGCATCTCTCGCAGCAGACGCGCATCCAACAGGGCAT
GGCCTCGCCCCATGCCGCCTGGCATGCCCCCCATGCGGGACACTATGCGC
CAACGGGCGGGTCACCGTTGCAGTACCATCATGCCATGAACGGAATGCTC
CATCATCCGGCCCATGCGGTTGCAGCGGCCCATCATCAGAGTGTGGCGCC
ACTGCATCATACGCTGCGCGGGGAATCGCCACAGCTGCACATACACCATC
ACATGGGCGGCGGCGATCGGGATGCCATAAGCGGCGGCGAGGAGGACACT
CCCACGTCCGATGATCTGGAGGCCTTTGCCAAGCAGTTCAAGCAGCGCCG
AATCAAGCTGGGCTTTACCCAGGCCGATGTGGGCCTGGCACTGGGCACTC
TCTATGGCAATGTGTTCTCCCAGACGACCATCTGCAGATTCGAGGCACTG
CAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTGCTGCAGAAGTG
GCTGGAGGAGGCGGACTCCACAACGGGTTCACCCCACGTCCATTGACAAG
ATCGCCGCTCAGGGCGTAAGCGCAAGAAACGCACCAGCATCGAGGTGAGC
GTGAAGGGGGCACTGGGAGCAGCACTTCCACAAGCAGCCGAAGCCATCCG
CCCAGGAGAATACTCGTTGGCCGACTCCTGCAGCTGGAGAAAGGAGGTGG
TACGCGTGTATCTGCATCGCGCAGAAGGAAAGGCATGACGCCGCCAATAC
GCTCGCGCGCACTGATGAAC
UFO07572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 4380 | CG10037-RF | 669..1773 | 9..1105 | 5155 | 98.5 | Plus |
| vvl-RE | 4380 | CG10037-RE | 669..1773 | 9..1105 | 5155 | 98.5 | Plus |
| vvl-RC | 4380 | CG10037-RC | 669..1773 | 9..1105 | 5155 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6790826..6791876 | 9..1059 | 4940 | 99.2 | Plus |
| 2L | 23513712 | 2L | 12685229..12685408 | 687..866 | 510 | 85.6 | Plus |
| 2L | 23513712 | 2L | 12626573..12626754 | 675..856 | 505 | 85.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:02 has no hits.
UFO07572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:02 Download gff for
UFO07572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RB | 221..1347 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:32 Download gff for
UFO07572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 661..1787 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:30 Download gff for
UFO07572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RC | 661..1787 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:30 Download gff for
UFO07572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6790818..6791944 | 1..1117 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:32 Download gff for
UFO07572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6783918..6785044 | 1..1117 | 97 | | Plus |
