UFO07576.5prime Sequence
1166 bp (1035 high quality bases) assembled on 2011-07-06
> UFO07576.5prime
CAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCCTGAAGAAG
ATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTCGATTGCAG
CGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGTGTCGCTTG
TCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCTGCGACCGC
AATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATTCTGAAATG
CGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAACGCCGACA
CTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTATCGGACTAC
GAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATACCGGAGAC
AGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGCTCGCATCT
GCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCTGCACCAAG
GAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCCAACATTAA
GCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGTGATCATCG
AGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACCTGAACGCC
TTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCGATGTGCGC
AGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGGTCACATTC
GCTACTACCTGGCACCCAAGATCGAGGACAACGAGACAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCACAGGAGTCC
AGCGGAGCTCGATTATCAAATTACGCCCCGCCCTGCACTCATCGCGAGTA
CTGTTTGTTAATTCATTAGCATTCTGCGACTGCAGCCATCACAAACGCAT
GATGAACTGAATCGCAGCGGCAATCAGACCTGTCGCTGCTATAATATTTG
GCCATGGTGAACCGGG
UFO07576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCNA-RA | 1070 | CG9193-RA | 163..942 | 9..788 | 3900 | 100 | Plus |
| PCNA-RB | 997 | CG9193-RB | 90..869 | 9..788 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20261882..20262556 | 788..114 | 3375 | 100 | Minus |
| 2R | 25286936 | 2R | 20262614..20262721 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:27 has no hits.
UFO07576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:05 Download gff for
UFO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RA | 129..920 | 1..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:41 Download gff for
UFO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RB | 82..873 | 1..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:38 Download gff for
UFO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCNA-RB | 82..873 | 1..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:38 Download gff for
UFO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20261878..20262553 | 117..793 | 99 | <- | Minus |
| 2R | 20262614..20262729 | 1..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:41 Download gff for
UFO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16149383..16150058 | 117..793 | 99 | <- | Minus |
| arm_2R | 16150119..16150234 | 1..116 | 97 | | Minus |
