UFO07580.5prime Sequence
1155 bp (1018 high quality bases) assembled on 2011-07-06
> UFO07580.5prime
CAGTCGACATGGATGACCGAAATGAGATACCTCAGGATGGCCCCGCCAGC
ATGGAACCCGAGGGCGTCATCGAGTCCACCTGGCACGAGGTGTACGACAA
CTTCGATGACATGAACTTGCGCGAGGAGTTGCTGCGCGGCATCTACGGTT
ATGGTTTCGAGAAGCCGTCGGCCATCCAGCAGCGCGCCATCATTCCCTGT
GTGAGGGGTCGCGATGTCATTGCCCAGGCCCAGTCGGGAACTGGCAAGAC
TGCCACCTTCTCGATTGCTATCCTTCAGCAAATCGACACGAGCATTCGCG
AGTGCCAGGCGCTGATCCTGGCCCCCACTCGCGAGTTGGCCACGCAGATC
CAGCGCGTGGTGATGGCGCTCGGCGAGTACATGAAGGTGCACTCGCACGC
CTGCATTGGCGGCACTAACGTGCGCGAAGACGCCCGCATCTTGGAATCCG
GTTGCCATGTGGTGGTGGGCACTCCTGGCCGCGTCTACGACATGATCAAC
CGCAAGGTGCTGCGCACCCAGTACATCAAGCTGTTCGTGCTGGATGAGGC
CGATGAGATGTTGTCCCGCGGTTTCAAGGATCAGATCCAGGATGTCTTCA
AGATGCTGCCCCCAGATGTGCAGGTCATCCTGCTGTCCGCCACCATGCCG
CCGGATGTGCTCGAAGTGAGCCGTTGCTTCATGCGTGATCCCGTCAGCAT
CCTGGTTAAGAAGGAGGAACTGACCCTTGAGGGTATCAAGCAGTTTTACG
TCAACGTGAAGCAGGAGAACTGGAAACTGGGCACCCTTTGCGATCTGTAC
GATACGCTGTCCATCACCCAGTCGGTAATCTTCTGCAACACCCGTCGCAA
GGTGGACCAACTGACCCAGGAGATGTCTATCCACAACTTCACCGTCTCGG
CCATGCACGGCGACATGGAGCAGCGTGATCGCGAGGTCATCATGAAACAA
TTCCGTTCGGGCTCGTCTCGTGTCTGATTACACTGATTTACTGGCGGCGG
CGTATTGATGTGCAGCAGGTGTCGTGGTCATCAACTATGATCTGCCCTCG
AACCGCCGAGAACTACATTTCAATAGAATTGGTCGCGGGGGGTCGGTTTC
GTTCGCCAAAGCTGGTTTGCGAATCAACTTTTATTACGAATGTAGTATTC
GACGA
UFO07580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4a-RF | 1939 | CG9075-RF | 227..1347 | 9..1137 | 5230 | 98.2 | Plus |
| eIF-4a-RE | 2021 | CG9075-RE | 71..1191 | 9..1137 | 5230 | 98.2 | Plus |
| eIF-4a-RD | 1960 | CG9075-RD | 458..1578 | 9..1137 | 5230 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5984010..5984626 | 237..853 | 3085 | 100 | Plus |
| 2L | 23513712 | 2L | 5983010..5983237 | 11..238 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 5984717..5984937 | 850..1069 | 835 | 96.9 | Plus |
| 3R | 32079331 | 3R | 8314210..8314350 | 717..857 | 270 | 79.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:37 has no hits.
UFO07580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:07 Download gff for
UFO07580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RB | 290..1393 | 3..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:47 Download gff for
UFO07580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 220..1323 | 3..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:42 Download gff for
UFO07580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 451..1554 | 3..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:42 Download gff for
UFO07580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5983003..5983236 | 1..237 | 97 | -> | Plus |
| 2L | 5984011..5984624 | 238..851 | 100 | -> | Plus |
| 2L | 5984719..5984942 | 852..1076 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:47 Download gff for
UFO07580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5984719..5984942 | 852..1076 | 96 | -> | Plus |
| arm_2L | 5983003..5983236 | 1..237 | 97 | -> | Plus |
| arm_2L | 5984011..5984624 | 238..851 | 100 | -> | Plus |
