UFO07589.5prime Sequence
1126 bp (1016 high quality bases) assembled on 2011-07-06
> UFO07589.5prime
CAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAACCCGACAAG
CCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGAGTCGGAGT
GGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCCACCGGAGC
AGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAGGTGCCAAC
GCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACCGACGAGGA
TTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGACACGCAGG
GTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAGGCTACATT
CCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAACCCTGGTA
CTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCTACTGCCAG
AGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCCGTCACAAC
GACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCATTATCGCAT
CAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCACGACATTCA
GAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTGATGGCCTA
TGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCTGTAACTGA
GGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAGAACGTCTT
TGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATGTCTGGGAG
GGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTGAAATCTGG
TACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCATGAAGAAAC
TGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTGTTGAGGAG
CCTATCTATATTATCACAGAGTTAATGAAGCACGGTTCACTGTTGGATTT
CTCCAAGCCATTGCAGGCAGGTCGTAGCCTTAAAATGCAACTTCTGATTG
ATTTGCACCGCCAAATAGCTGCTGCATGCTACCTGCAGTCCCAGATTATA
TTTCATAGGATTACGCCGCAGGTACT
UFO07589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src42A-RA | 3017 | CG44128-RA | 575..1681 | 9..1109 | 5200 | 98.5 | Plus |
| Src42A-RB | 6398 | CG44128-RB | 4046..4767 | 394..1109 | 3275 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5982418..5982709 | 9..300 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 6010376..6010550 | 678..852 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 6010609..6010757 | 849..997 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 6009063..6009184 | 395..516 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 5986570..5986666 | 298..394 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 6009268..6009355 | 514..601 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6009420..6009501 | 599..680 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:42 has no hits.
UFO07589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:07 Download gff for
UFO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 563..1664 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:49 Download gff for
UFO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 566..1667 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:43 Download gff for
UFO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 566..1667 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:43 Download gff for
UFO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6010379..6010547 | 681..849 | 100 | -> | Plus |
| 2R | 6010610..6010768 | 850..1007 | 98 | -> | Plus |
| 2R | 5986572..5986666 | 300..394 | 100 | -> | Plus |
| 2R | 6009063..6009184 | 395..516 | 100 | -> | Plus |
| 2R | 6009271..6009355 | 517..601 | 100 | -> | Plus |
| 2R | 6009423..6009501 | 602..680 | 100 | -> | Plus |
| 2R | 5982409..5982708 | 1..299 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:49 Download gff for
UFO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1869914..1870213 | 1..299 | 98 | -> | Plus |
| arm_2R | 1874077..1874171 | 300..394 | 100 | -> | Plus |
| arm_2R | 1896568..1896689 | 395..516 | 100 | -> | Plus |
| arm_2R | 1896776..1896860 | 517..601 | 100 | -> | Plus |
| arm_2R | 1896928..1897006 | 602..680 | 100 | -> | Plus |
| arm_2R | 1897884..1898052 | 681..849 | 100 | -> | Plus |
| arm_2R | 1898115..1898273 | 850..1007 | 98 | -> | Plus |
