UFO07608.5prime Sequence
1180 bp (1040 high quality bases) assembled on 2011-07-08
> UFO07608.5prime
CAGTCGACATGTTAGCTGAACAACCGTATATATATATATATAGTATATAT
ATTACATATATGTATGTATATACAGACACCCACATACGAGCGCCAATAGA
GCGAGATACACCCGTTTTTATTGTGCTGCGCATTTTCAACGTGCGGCTGA
ACTGTGAATTCGAGTATAGTACCCTAGATATAGGTAGAATCGGTACAAAC
CAGGTGGTACAGGTGGCATCGCGTGCAAAGCCGCACTTGATGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATTGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCCGGA
AATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA
TGGAAAACGGTGTAACAAGGGTGAACACTATCCCATTATCACCAGCTCAC
CGTCTTTCATTGCCATACGAAATTCCTGGATGAGCATTCATCAAGGCGGG
CAAGATGTGAATAAAGGCCGGGATAAAACCTTGTGCTTATTTTTCTTTAC
GGTCTTTAAAAAGGCCGTAATATCCAGCTTGAACCGGTCTTGTTATAGGT
ACCATTGGAGCAACTGAACTGAAATGCCTCAATGTTCCTTTACGAATGCC
ATTTGGAATATATCAAACGGTGGTAATCCAAGTGAATTTTTTTCTCCATT
AGCTTCTTAGGCTCCTGAGGATCTCATAAC
UFO07608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11000-RC | 6816 | CG11000-RC | 5031..5264 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5811473..5811706 | 9..242 | 1170 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 812..879 | 123 | 68.1 | Plus |
UFO07608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:25 Download gff for
UFO07608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31555-RB | 917..1155 | 5..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:46 Download gff for
UFO07608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11000-RC | 5029..5267 | 5..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:34 Download gff for
UFO07608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11000-RC | 5029..5267 | 5..246 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:34 Download gff for
UFO07608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5811471..5811706 | 5..242 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:46 Download gff for
UFO07608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1637193..1637428 | 5..242 | 99 | == | Plus |
