UFO07610.5prime Sequence
1081 bp (1007 high quality bases) assembled on 2011-07-08
> UFO07610.5prime
CAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTG
GCACTTGGCCAGGCTCAACAGCACGGTGGGCTGGCCGTCGAACACAGATC
GAGGTCGGCTCCGCTGGTCTTCGAGGAGCATCCTTACTACGGAGGATTGA
GGGGTCAGCTTCTCCAGCTGCGTCCGCAGCGGGACGGCAGTGTGGGCAGC
TTCATCCTGCAGCGCCAACAGCCGCAGTTGAGGGCTGTACCTAGAGACTC
CGATGACACCATCACCATTTCGGCCGCAAGCATCTCGGCGGTAGCTGATG
CTAGTGGAGCTTCTAGCTCCAGCAGCTCGATCTCAGCCAGCGCCAGTGAT
TTCAATCGGATTCAGTCGGCCGCCGCTCGGTTGGTTGCCATTCAGGAGTT
GGCCAAGCGCAAGGGTTCCTTCAGTGAGGAGGACAACAAGATCTATGCCA
GCAGCTTACTGGAACTGGGCCAGGCTGCCCAGAGTTTGGCCATGCTCCAG
CAAAGCGGACAGATTAAGGACTTTAGTGTTCTGCTGCAGCCGGACATGTT
TGGCAATCCTCAAAAGCAGCCAGCCAATTTCGGGCTAGAGGCCACCAACA
ATCCGGCGGACCAGAAGATCGACGAACAGAAACTGGACGAGGTCACTGAG
CAACAATTCTCGCCGGATGAGCAGTTCCTGCCCCCCAACAACGAGGATCC
CTATGAGGATGTTAACGATAGTGTGTCCGTAATGGCTCCTAAGAAAGATG
CCGCCGTGGCTGAGGCAAAACCAGTGGGTCTTTCGATTGCCGGTGAAGGT
GGCGTGGCCTCCTCAAAACCGAACGCTGTGGCTCTCTCCGGGCCGGAATG
GATTGGCCGTACCTTCGCCCAAGGCCACAGCCATTGCTGGAGTTTCTTCC
GAGGAGGCAGCTGCCTTCAGCAATTTCATTTGCCCACTCGCAATCAACTG
GTGATCAAAAGTCCCAAATTGGCCTCGGAAAGGCTAGCGAGACTATGACT
ATATGATGTACGGCTGACGGTTGCCCGCTTCCTCGGACCGGGAACTCCTC
AGCAATTTGATCCCGGCTCGCATCTCCAGAA
UFO07610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RI | 1614 | CG11905-RI | 270..1339 | 9..1076 | 4970 | 98.1 | Plus |
| CG11905-RF | 1673 | CG11905-RF | 329..1398 | 9..1076 | 4970 | 98.1 | Plus |
| CG11905-RB | 1491 | CG11905-RB | 147..1216 | 9..1076 | 4970 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16929020..16929707 | 779..92 | 3440 | 100 | Minus |
| 3L | 28110227 | 3L | 16928656..16928957 | 1076..777 | 915 | 93.5 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 91..24 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:08:24 has no hits.
UFO07610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:21 Download gff for
UFO07610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RI | 259..1339 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:38 Download gff for
UFO07610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RB | 140..1220 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:25 Download gff for
UFO07610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RB | 140..1220 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:25 Download gff for
UFO07610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16928651..16928956 | 778..1081 | 92 | <- | Minus |
| 3L | 16929022..16929707 | 92..777 | 100 | <- | Minus |
| 3L | 16933293..16933367 | 14..91 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:38 Download gff for
UFO07610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16921751..16922056 | 778..1081 | 92 | <- | Minus |
| arm_3L | 16922122..16922807 | 92..777 | 100 | <- | Minus |
| arm_3L | 16926393..16926467 | 14..91 | 93 | | Minus |
