UFO07611.5prime Sequence
1070 bp (988 high quality bases) assembled on 2011-07-08
> UFO07611.5prime
CAGTCGACATGCACAACCGTTGCGGATCCATTTGGCTGCTGGCGGCCGTC
CTGCTGCTGCTGGCGCTCCTGCTTCCGCAGGCACTGCTGCCTACCGTCGA
TGCGGCCAGCGAACCCGTGTGCTCCTACCGCAACTCGGAGGATGAGACCA
TCTTTCTCAAGTATCTGCCGCTGCTGAGACGCGGACAGGACTACGTGGAC
TTCGGCAAGGATGGCAAGTGCCTCAAGCGGGCCATCTGCACGGACACCTT
CAAGACCATCGTGGAGGACTGTGGACAGCAGAAGGTCACCTGCGGCAACA
AGGATCGCTTCACCGGAGTTTTCCCTGCCTGCTGCCTCAAGTGTCCCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTTCAATAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGC
CGGGAAATCGTCGTGGTATTCACTTCCAGAGCGATGAAAACGTTTTCAGT
TTGCTCATGGAAAACGTGTTACAAGGTGAACACTATCCCATATCACAGCT
CACCGTTCTTTTCATTGCCATACCGAAATTCCGGATGAGCATTCATCAGG
CGGTCAAGAATGTGATTAAA
UFO07611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15201-RA | 489 | CG15201-RA | 34..372 | 9..347 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11144319..11144482 | 105..268 | 820 | 100 | Plus |
| X | 23542271 | X | 11144153..11144249 | 9..105 | 485 | 100 | Plus |
| X | 23542271 | X | 11144614..11144692 | 269..347 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 222..278 | 911..965 | 127 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1602 | 89..20 | 114 | 65.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1129 | 80..17 | 109 | 65.2 | Minus |
UFO07611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:22 Download gff for
UFO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:39 Download gff for
UFO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:26 Download gff for
UFO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:26 Download gff for
UFO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11144153..11144249 | 9..105 | 100 | -> | Plus |
| X | 11144320..11144482 | 106..268 | 100 | -> | Plus |
| X | 11144614..11144692 | 269..347 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:39 Download gff for
UFO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11038186..11038282 | 9..105 | 100 | -> | Plus |
| arm_X | 11038353..11038515 | 106..268 | 100 | -> | Plus |
| arm_X | 11038647..11038725 | 269..347 | 100 | == | Plus |
