UFO07612.5prime Sequence
1107 bp (988 high quality bases) assembled on 2011-07-08
> UFO07612.5prime
CAGTCGACATGCATCGCACGCAGGACGAGCTGGACGACGTGATGATGTCC
TCGATGACATCGTCGGCGGTGGTCATGCGTTCCACAGCCACTGGCGCACG
TCTACTGAGGCCAAGAAATCAGACGCCCGTGGGCAGATCCGGCAGCGGAA
CACGCCACTCCACGGGCATGTATTTTACGGAGGTGGATGTGACCGCCAAG
AATGCCGGCGATTTCAACTACAACATTCGCAGCCAGGATGACATCAGCTC
TGGCTACTCGAGCGCCGAACCTGTGAGTGGTCTCAGTCGCACCTCCTCCA
TGACAAACGCTTCCAAGGCTCGAGCCAAGTCCAAACGCAATGAGTTGCTG
GAAGAGATGAGAGACGAGGTCTACTTAGACAACCAGCTGTATTTTCAAGG
TGTGCAAAGGAAGAGCTCATTTCCAGAAGCTGAAGAACTGAAAATAGTGG
AGAGTTCTGAAAGCATCCAATCTCAGGAGTTGGAAAAGGTGCTGAAGGAG
GAGAACATTGATGCAGAAGATGAGGCCTTTTTTGAAACCTTGCCTTTGAT
AGAGGAGCACATAAATGAAGTGGTGGCTAACTATGGAAGGGATGAAAAGT
TGTTGCCCCAAGAGCGGAAGCATAATTCGATAGAAGAGGAGCAGTTTGAA
GATGCATTGTTTGAGGAACCACAGAAATGTGTCTCAGATGAAGTGGATGC
TAAAAATATTGAGGAGATACTAACGGATAGAAGTCAAAACCAGACTCCGA
ATGGATCTGCTGAAACTACTGATTCAGGAACACCTTCCCAAAACAAGCCC
TATGTCCATCCACCGATAGACCCATTTTTGCTGGTTCTAAGCGCTTCTGC
ATCTGCTCCGGATCCCTTTATGCCCGAACGGGCCGCGTCCAATGTCGCCG
CGTGAAATGCGCGAGACTCTGGAAGGAGAATTAAGCACAGTTTCCGTGCC
CAACTGGAAAGCAGAGCCCTTCGTATCAGCCTCACCATCACCCTCCTTGG
CGGCCCAAAGGCCAACATGGCAAAGGACGGAGCTTCCACCACCCCCCTTT
GCTACCCAAGAAAGCACTTCATTTGGAGTTCCCAACCCGGAGCCCCCACA
TCACGCC
UFO07612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RQ | 2641 | CG42678-RQ | 998..2064 | 9..1087 | 4970 | 98.1 | Plus |
| CG42678-RP | 2601 | CG42678-RP | 958..2024 | 9..1087 | 4970 | 98.1 | Plus |
| CG42678-RK | 1931 | CG42678-RK | 174..1240 | 9..1087 | 4970 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22930387..22931068 | 343..1029 | 3080 | 98.3 | Plus |
| 2R | 25286936 | 2R | 22929865..22930073 | 9..217 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 22930186..22930319 | 211..344 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:34 has no hits.
UFO07612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:23 Download gff for
UFO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RK | 168..1247 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:41 Download gff for
UFO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RH | 952..2031 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:29 Download gff for
UFO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RK | 168..1247 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:29 Download gff for
UFO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22929859..22930073 | 1..217 | 98 | -> | Plus |
| 2R | 22930193..22930319 | 218..344 | 100 | -> | Plus |
| 2R | 22930389..22931080 | 345..1042 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:41 Download gff for
UFO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18817382..18817596 | 1..217 | 98 | -> | Plus |
| arm_2R | 18817716..18817842 | 218..344 | 100 | -> | Plus |
| arm_2R | 18817912..18818603 | 345..1042 | 98 | -> | Plus |
