UFO07617.5prime Sequence
1148 bp (1036 high quality bases) assembled on 2011-07-08
> UFO07617.5prime
CAGTCGACATGAAGACTGAGCTGCGTTCCTGCGCAGCGTGCGGGGAACCC
ATCTCGGATCGGTTCTTCCTGGAGGTCGGCGGCTGCTCCTGGCACGCCCA
CTGCCTCCGCTGCTGCATGTGCATGTGCCCCCTGGATCGCCAGCAGTCCT
GCTTCATCCGGGAGAGGCAGGTGTACTGCAAGGCCGACTACAGCAAAAAT
TTCGGCGCCAAGTGCTCCAAGTGCTGTCGCGGCATCTCCGCCTCGGATTG
GGTGCGTCGGGCACGGGAGCTGGTCTTCCATCTAGCCTGCTTTGCCTGCG
ACCAGTGTGGACGCCAGTTGTCCACCGGCGAGCAGTTCGCCCTCATGGAT
GACCGGGTGCTCTGCAAGGCTCATTATCTGGAGACGGTCGAGGGTGGCAC
CACATCGAGCGACGAGGGTTTTTTTGGCGATGGTTATCACAAGAGCAAGA
CGAAACGGGTGCGCACCACCTTCACCGAGGAGCAGTTGCAAGTGCTGCAG
GCCAACTTCCAGATTGACAGTAATCCGGATGGCCAGGATCTGGAGCGGAT
CGCCTCGGTGACCGGTCTCAGCAAGCGTGTGACGCAAGTATGGTTCCAGA
ACTCGCGGGCGCGTCAGAAAAAACACATACATGCTGGTAAGAATAAAATA
CGCGAACCGGAAGGAAGCTCATTTGCGCGTCATATTAACCTGCAGTTAAC
GTATTCATTTCAGAATAACGCACAGAACCCAATGCATTTGAATGGCTCTA
AAGCGGGTCTATACCCGACTCATGAATCCTCTATGGATGAATTGTCGCAG
GACTCCAGTGTACACTGTATGCCCAGCGAGGTGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCACACTAGCCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAGGGGAGCTCGAT
ATCAATTTACGCCCCGCCTGCACTCATTCGCAAGTATCTGTTGTATCATA
GCCATCTGCGACTGAAGCTGCAATAAACGGATGATGACTGAATTCGCC
UFO07617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Awh-RC | 2104 | CG1072-RC | 537..1361 | 9..833 | 4065 | 99.5 | Plus |
| Awh-RB | 2104 | CG1072-RB | 537..1361 | 9..833 | 4065 | 99.5 | Plus |
| Awh-RD | 2092 | CG1072-RD | 537..1349 | 9..833 | 3875 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3860200..3860423 | 425..648 | 1120 | 100 | Plus |
| 3L | 28110227 | 3L | 3859163..3859384 | 193..414 | 1095 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3857940..3858123 | 13..196 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 3860636..3860761 | 649..774 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 3860890..3860949 | 774..833 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..734 | 78..168 | 132 | 63.2 | Plus |
UFO07617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:27 Download gff for
UFO07617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 524..1361 | 1..840 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:54 Download gff for
UFO07617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 529..1366 | 1..840 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:40 Download gff for
UFO07617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 529..1366 | 1..840 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:40 Download gff for
UFO07617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3857940..3858123 | 13..196 | 100 | -> | Plus |
| 3L | 3859167..3859384 | 197..414 | 100 | -> | Plus |
| 3L | 3860190..3860423 | 415..648 | 98 | -> | Plus |
| 3L | 3860636..3860761 | 649..774 | 100 | -> | Plus |
| 3L | 3860891..3860954 | 775..840 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:54 Download gff for
UFO07617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3857940..3858123 | 13..196 | 100 | -> | Plus |
| arm_3L | 3859167..3859384 | 197..414 | 100 | -> | Plus |
| arm_3L | 3860190..3860423 | 415..648 | 98 | -> | Plus |
| arm_3L | 3860636..3860761 | 649..774 | 100 | -> | Plus |
| arm_3L | 3860891..3860954 | 775..840 | 94 | == | Plus |
