UFO07622.5prime Sequence
1125 bp (985 high quality bases) assembled on 2011-07-08
> UFO07622.5prime
CAGTCGACATGGGTTGGTCACCGCTGATGATAAGGTATCTGGCATTCCTC
TTCAATTTTCTTTGTGCGGTCCTGGGCATCGCCACTATTGTGGTCAATGT
AATAGCAATCGATCAAATAGCTCCAAAGGACCAACTCATCCTGGGACTGT
ACATTGCCGTTGGGTCCATCGTCTTCTTGCTCTCATTTTTTGGATGCTTT
GGTGCCATTAAGGAGAGCATCTGTGTTACCTGGGCGTATGCCACCTCGAT
GCTGGTAATGCTGATCGTCTCAATAGTCATGCTTTTTGTCTTCCGTATGC
ATTTCGAAGAAGACTCCATTACCAAGCTGAAACAAGCCTTTGCCAAGCAG
ACAAACACTTTCGACGCAATGGCCGAGTACCAGACACAGTACCAGTGCTG
TGGCATATACAAGTTATTTTGACTATGGAGACGCCTACATAACTGTTCCA
AGTAGCTGTTATGACCAAAATGATACGCCCTACAGAGACGGTTGTCTGGC
CAAAATGGAGACCCAGTACGAGGAGCTCCTCAAGGGTCCTAAGATTGTTG
GCTGGATGCTGATGGTCATTGAGATAGGTGCCTTCACTTTCTCCACAATC
ATGGGAGTGTCCTTAAGGAACGAACTACGACGCTCTGCGTATGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAATCAAC
AGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACTGAATCGCAGCGGCATCAGCACTTGTGGCTTGCG
TATATATTTGCCCATGCGAAAACGGGCGCGAAGAGTTGTTCATATTGGGC
CATGTTTAAATTCAACTGGTGTAAACTCACCCCACCATTGCCTGAAAACG
AAAACATTTTCTAAATAATCCTTAG
UFO07622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Er-RA | 848 | CG12837-RA | 94..727 | 8..642 | 3105 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7065131..7065299 | 68..236 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 7065681..7065866 | 387..573 | 840 | 97.9 | Plus |
| 2R | 25286936 | 2R | 7065359..7065512 | 236..389 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 7065922..7065992 | 572..642 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 7064492..7064554 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:52 has no hits.
UFO07622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:25 Download gff for
UFO07622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 72..714 | 1..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:48 Download gff for
UFO07622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 89..731 | 1..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:36 Download gff for
UFO07622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 89..731 | 1..646 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:36 Download gff for
UFO07622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7064487..7064552 | 1..68 | 94 | -> | Plus |
| 2R | 7065132..7065299 | 69..236 | 100 | -> | Plus |
| 2R | 7065360..7065512 | 237..389 | 100 | -> | Plus |
| 2R | 7065684..7065866 | 390..573 | 97 | -> | Plus |
| 2R | 7065924..7065996 | 574..646 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:48 Download gff for
UFO07622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2951992..2952057 | 1..68 | 94 | -> | Plus |
| arm_2R | 2952637..2952804 | 69..236 | 100 | -> | Plus |
| arm_2R | 2952865..2953017 | 237..389 | 100 | -> | Plus |
| arm_2R | 2953189..2953371 | 390..573 | 97 | -> | Plus |
| arm_2R | 2953429..2953501 | 574..646 | 97 | == | Plus |
