UFO07626.5prime Sequence
1145 bp (1043 high quality bases) assembled on 2011-07-08
> UFO07626.5prime
CAGTCGACATGTCCGCCCTGCGTCGGGTGCGCAAATACTTTATATCCTCT
CAGGTCTACGAGGCACTGCGTCCACTATTCTTCCTAACGTTTCTATACGG
ACTAACGCCATTTCATGTGGTCAGACGAAAGATGGGGGAATCCTACTTGA
AGATGTCCTGTTTCGGTGTCTTCAACATCTTCATTTACATCTGCCTCTGC
GGATTCTGCTACATTTCATCCCTGAGGCAGGGAGAATCCATTGTGGGATA
TTTCTTTCGCACCGAAATCTCCACAATCGGCGATCGTTTGCAGATCTTTA
ATGGTTTGATAGCTGGTGCTGTGATTTATACGTCGGCAATCCTAAAACGC
TGCAAGCTTTTGGGCACACTGACCATTCTACACAGCTTGGATACGAACTT
CTCGAACATTGGAGTACGTGTGAAATATTCGAGAATATTCCGGTACTCGC
TACTGGTGCTGATCTTCAAGCTACTGATCCTGGGTGTTTATTTCGTTGGA
GTTTTCCGGCTGCTCGTCTCCCTGGATGTCACACCATCGTTCTGCGTTTG
TATGACATTCTTTCTGCAACATTCGGTTGTCTCCATAGCGATTTGTTTGT
TCTGCGTGATTGCCTTCAGTTTCGAGCGGCGCCTCAGTATCATCAATCAG
GTGTTGAAGAACCTAGCCCATCAATGGGACACCCGAAGCCTCAAGGCAGT
GAATCAAAAACAGCGCTCTCTACAATGTCTCGATTCATTTTCCATGTACA
CCATTGTAACCAAGGATCCTGCGGAGATTATACAGGAGTCCATGGAGATA
CATCATCTCATTTGCGAGGCAGCTGCCACGGCTAACAAATATTTTACCTA
CCAATTGCTGACCATTATATCCATAGCATTTCTGATCATCGTTTTCGATG
CATACTATGTTCTGGAGACGCTACTGGAAAATCGAAGCGCGAAAGCAAAT
TCAAACTGTGATTTGTGACATTTTTCTCGTGTCAAATGATTTTGTATCTG
ATCGCCATATTTCCATTGTCGAGGGAAGTAATCGAGCATCAAAAGGAGCG
AGAAACTGAAGCATATGCACTTCCTTACTCAATAAAAACAAAGTGCTGAG
GTCAGGAGAAACTTGCAGCATTGTCGATGCATGATGCACTGGAAA
UFO07626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr28b-RB | 1585 | CG13788-RB | 72..1213 | 9..1138 | 5250 | 98.1 | Plus |
| Gr28b-RD | 1505 | CG13788-RD | 628..1133 | 645..1138 | 2070 | 95.7 | Plus |
| Gr28b-RC | 1595 | CG13788-RC | 716..1223 | 643..1138 | 2065 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7459927..7460571 | 653..9 | 3225 | 100 | Minus |
| 2L | 23513712 | 2L | 7455351..7455764 | 1055..648 | 1790 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:30 has no hits.
UFO07626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:30 Download gff for
UFO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1213 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:07 Download gff for
UFO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1213 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:50 Download gff for
UFO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1213 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:50 Download gff for
UFO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7455262..7455761 | 651..1138 | 95 | <- | Minus |
| 2L | 7459930..7460578 | 1..650 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:07 Download gff for
UFO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7455262..7455761 | 651..1138 | 95 | <- | Minus |
| arm_2L | 7459930..7460578 | 1..650 | 99 | | Minus |
