UFO07629.5prime Sequence
1157 bp (1058 high quality bases) assembled on 2011-07-08
> UFO07629.5prime
CAGTCGACATGGGAGCATTGGCAGAGCTGGCTGGTGATGAGAAAAACGGC
GAAGGATCTCGTACTTTTGTGTTCACCAACGAGGGCCACACGCTGGGAAA
TGCGCTGAAAACGATCATAGCCCGCTACCCGGAGGTGGATTTCTGTGGCT
ACACGATTCCGCATCCCACGGAGCAGAAGCTGCACTTCCGCATTCAATCC
CGTCGAGACAGAGCCATAGATATACTTAAACGGGGACTGGAGGATCTGGA
GGGTCTGTGTGATCATACAATCGTTACGTTCGAAAAGGAGATGGCCGAGT
TTAATGCAATGAAAGTGGAAAATGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACTCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGT
GAACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAAATT
CCGATGAGCATTCATCAGGCGGGCAGAATGTGATAAGCCGGATAACTTGT
GCTATTTTTTCTTACGTCTTTAAAGCGTAATATCAGCTGACCGTCTGTAA
AGGTACATGGACACTGACGAATGCCTAGGTTCCTACAGTGCCATGGGATA
TCACGGG
UFO07629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cg-RA | 404 | CG10685-RA | 58..372 | 9..323 | 1575 | 100 | Plus |
| l(2)37Cg-RD | 681 | CG10685-RD | 352..649 | 26..323 | 1490 | 100 | Plus |
| l(2)37Cg-RC | 633 | CG10685-RC | 305..601 | 27..323 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19133055..19133353 | 323..25 | 1495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:39 has no hits.
UFO07629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:32 Download gff for
UFO07629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cg-RA | 58..372 | 9..323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:12 Download gff for
UFO07629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cg-RA | 58..372 | 9..323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:54 Download gff for
UFO07629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cg-RA | 58..372 | 9..323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:54 Download gff for
UFO07629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19133409..19133426 | 9..26 | 100 | | Minus |
| 2L | 19133055..19133351 | 27..323 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:12 Download gff for
UFO07629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19133055..19133351 | 27..323 | 100 | <- | Minus |
| arm_2L | 19133409..19133426 | 9..26 | 100 | | Minus |
