UFO07633.5prime Sequence
1126 bp (1002 high quality bases) assembled on 2011-07-08
> UFO07633.5prime
CAGTCGACATGATCAATCCCCAACTTTTGCTGATCGCCGCGCTTATTGCG
TTTATTGGGAAAGTGGCACACGCTCAAATCGCCTTTGTTGAGGATCAAGA
CATTGATAAGAAGAAGGCCAACCTTGCGGGTCGCAAGCCACTGTATTCGC
CAGCCCGATGCCCCAAGCACCAGCTTCTTTATCCGGGGGACCAGCAGAAG
CAGAACGACTGGGTTTGCGACTGCGCGCCAGCCACACTGTATTACCCGGA
GACCGATGGCTGCTATCCGGCCTACCGACAGGGACCCTGTGAGGCTGGAC
AGATTCTGGTGCTCTACAAGGAGGAGATCATCCCGAAGTGCGTACGAAAT
CCATGTAACAGGGACGGACACTTTATGATTCGCGACACATGCTATGAGTT
CGGAAACACCAAGAAGGATGAATACCCGTGTCCTTACCAGGAGGCTTCCT
TTGTACTTGGCGTGAATCCCACCAACTTGATGGTGGACTGTGTGAAGCTG
TCCGTTCAACTGGAGACGCGTATTTCGGACACGGAGCAGGCTCCGCCGGA
ATACTACGTTGATTTGGCCGAGAAATGCGCACGCGGCAGTCGCCTAATGG
CTCAGGGAAAGTGTCCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGTAAGCCATCACAAACGCATGATGAACCTGATCGCAG
CGCATCAGCACCTTGTCGCTTGCGTATAATATTTGCCATGTGAAACGGGG
CGAGAGTTGTCCATATTGCCACGTTTAAATCAACTGGTGAACTCACCAGG
GATGGCCTGAAACGAAAAACTATTCTCAATAATCTAAGAATAGCAGTTCA
CGTAACCGCAACTTGCAATATTGTAA
UFO07633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12811-RA | 1002 | CG12811-RA | 262..870 | 9..617 | 3015 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10047384..10047771 | 617..230 | 1910 | 99.5 | Minus |
| 3R | 32079331 | 3R | 10048416..10048536 | 129..9 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 10047841..10047944 | 231..128 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:57 has no hits.
UFO07633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:35 Download gff for
UFO07633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 26..649 | 1..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:20 Download gff for
UFO07633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 256..879 | 1..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:01 Download gff for
UFO07633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 256..879 | 1..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:01 Download gff for
UFO07633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10047841..10047943 | 129..231 | 100 | <- | Minus |
| 3R | 10048417..10048542 | 1..128 | 96 | | Minus |
| 3R | 10047365..10047769 | 232..635 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:20 Download gff for
UFO07633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5873087..5873491 | 232..635 | 97 | <- | Minus |
| arm_3R | 5873563..5873665 | 129..231 | 100 | <- | Minus |
| arm_3R | 5874139..5874264 | 1..128 | 96 | | Minus |
