UFO07642.5prime Sequence
1157 bp (1054 high quality bases) assembled on 2011-07-08
> UFO07642.5prime
CAGTCGACATGTGTGTGAGAAGCTCACTGGGCAGTGTGATTTTAATTTAC
TTTGTCATCTTGCTTCGTTTGGTCAACTTGGTGCTGGCCCAGAACGAAGG
GAATATATCGGAATCGACGGTGGCCACGGGCCGCGAGGAGTGCGGCAGCA
CGCAGAAAATGGTGGACGAGTGCTTCAAGGATCTGCCGCCGCATCTAATG
GATTTCCTACAGAACACGAAAATCGTCATCAGCAAAAAGGAGATCACCGC
CAAGTGCAACATATTCAACCGTGGCATGAGGTGCTTCGATACTTACTCCA
AGCGTTGCCTGGACGATCGAAAGATGGGCACGTTTAAGAATAATGTGGAG
GGAGCTCGGCGATTTTTCTACAAGTTCTGCGGCGACGCCGATTTTCAGCG
TGACTATCTGAGGCACAAGGTCTGTTTTGCATACATCCAACTGGACTGGG
TCACCTGCACCACCGAGTTCGAGAACATCCTTAGTGAAGAGGTGCACGAC
GAAAGGCGCAACGCCAGCGAAAAGTTCCTCGAATTCTGCTGTGCCCGCTA
CGCGTACGAGAACTGCATCTACAACAGTGCCCGCTTCAAGTGCTACAAAA
ACTCGGCGGAGTTTGCCCGCGAGACGGCCAAAATGCTGTCGGATGAGAAG
CACTTTAGGAACTGTGCCGTCCTCCAGAACATCTGTGCCCACGACGCCGC
CGTGGCATTGGCCCAGTGGCACTGGATGGCGACGCCGATGATGCTGCTCC
TGATGCGGCTGGTGGTGCGGATCTGGGCGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTCTGAGTCATTACTGGATCTATCAACAGAGTCAAGCGAGCTCG
ATTATCAAATTACGCCCCCGCCTGCCACTCATCGCAGTACTGTTGTATTC
ATTAAGCATTCTGCGACATGCAAGCAATCCAAAACGGCATGATGACTTGA
ATCGCACGGCTCAGCACCTGGTCGCCTTGCCTATATTTGGCATGTGAAAC
GTGCAAA
UFO07642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13408-RA | 1189 | CG13408-RA | 81..851 | 9..779 | 3825 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22080462..22080712 | 9..259 | 1255 | 100 | Plus |
| 3R | 32079331 | 3R | 22082897..22083135 | 541..779 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 22081802..22081949 | 255..402 | 725 | 99.3 | Plus |
| 3R | 32079331 | 3R | 22082248..22082387 | 402..541 | 670 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:10:25 has no hits.
UFO07642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:39 Download gff for
UFO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 72..854 | 1..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:30 Download gff for
UFO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 72..854 | 1..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:10 Download gff for
UFO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 72..854 | 1..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:10 Download gff for
UFO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22082249..22082387 | 403..541 | 98 | -> | Plus |
| 3R | 22082898..22083138 | 542..783 | 99 | == | Plus |
| 3R | 22080453..22080712 | 1..259 | 98 | -> | Plus |
| 3R | 22081807..22081949 | 260..402 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:30 Download gff for
UFO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17906175..17906434 | 1..259 | 98 | -> | Plus |
| arm_3R | 17907529..17907671 | 260..402 | 100 | -> | Plus |
| arm_3R | 17907971..17908109 | 403..541 | 98 | -> | Plus |
| arm_3R | 17908620..17908860 | 542..783 | 99 | == | Plus |
