UFO07644.5prime Sequence
1128 bp (1032 high quality bases) assembled on 2011-07-08
> UFO07644.5prime
CAGTCGACATGATGTGGCGCCAGCAGGCGAACATCGACCCCAATGAGGAT
CCTGCCGAGGCATCACATGCTGTGCACGGCATTAATCAACAATCGCTGCA
AAAGTTTGCAACATGCCTGCAACATATTTCCCAATTACTGGAGTGTCCTG
TGTGCCTTGAGGTCATCAAACCACCTGGCTGGCAGTGCTGCAATGGACAC
GTGCTCTGCAATAATTGCCGCAGTCGCTCCGTAAAGTGTCCCGTGTGCCG
AGTTCCTTTGGGGCCGAGAGGCCGCTGTCTGCTGTCGGACAAACTGTTCA
CCCTGCTGGCGGAGAGTTTCCCCTGCGATGGCGGGAAAACCAACAAGGTG
GCTGCCTCCCAGGGCCATGGAAAGCTGAGCAGCGTCAACAAGTGCACAAA
TGAATATCATAATCAACCGAAATTGGCGCTGGCGAAGACGAGTTCCGGCA
AGTCCAAGTGCGGCAAGCAAATCTCCAGGCAACTCGAAACAGTTTTGGTG
GACCAAAGTCCTCGGGAAATCAGAAGAAAGAGTCAGCAGGGGCAGGAGCA
GGAGCAGGCGGTGCAGGAGGCTGTCCTGCCACGTTGCACGCTGATAAAAG
TGCAGCATCAGGAGGCCGCTGTCGAGCACTTTTCGGAGGAAGGTCACAAC
AATATGCTCGTTAAACCAAAGTTAAAGTTGAGTAAGAAAAGTTGGCGGAT
TACTGGGCCAGATCAAGACGGATTGCGCTGCGATGAAGTTGCCACCATAA
ATAATGGTGTCCAGGTGCAGGAGCAACAGCAGCAGCAGGAGCGGCAGCAG
CTGGGGCATGAGAAGTCAGCAAGCAGCGAGAGCGAGTATCAAAATTATCA
TTGCCCAACTGGGAAATCATGCAGCAGCCACAGTTACCAACTTGGGCCAG
CCAGTGGCCAACAAATTGTCAACAGTCGCGATGCAGCGCTGGCGGTGGTT
GAGAACTCGGGAGGTGCATCCTTATCAGCGGGGGAGCCATAAACAGCGCG
GCAGCGAGTAAATCAGGAGCTGCCACTGGAAGGCGGGTTCAATAGTCGGC
GGGAATGGCAGTTGTTGCGACTTTGACGCCGACCAACCGCTGCATGGTGC
CAATTCTACGCCCGTTCGGCTACGCTTG
UFO07644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34375-RA | 2218 | CG34375-RA | 451..1578 | 9..1128 | 5135 | 97.8 | Plus |
| CG34375-RC | 2070 | CG34375-RC | 300..1430 | 9..1128 | 5095 | 97.5 | Plus |
| CG34375-RB | 2221 | CG34375-RB | 451..1581 | 9..1128 | 5095 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23000841..23001582 | 1071..333 | 3285 | 98.3 | Minus |
| 3R | 32079331 | 3R | 23002841..23003015 | 334..160 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 23006593..23006682 | 163..74 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 23008002..23008067 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 4290..4374 | 498..578 | 119 | 62.4 | Plus |
UFO07644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:41 Download gff for
UFO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1539 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:34 Download gff for
UFO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1539 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:14 Download gff for
UFO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1539 | 9..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:14 Download gff for
UFO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23008002..23008067 | 9..74 | 100 | | Minus |
| 3R | 23000818..23001581 | 334..1092 | 97 | <- | Minus |
| 3R | 23002842..23003013 | 162..333 | 100 | <- | Minus |
| 3R | 23006595..23006681 | 75..161 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:34 Download gff for
UFO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18826540..18827303 | 334..1092 | 97 | <- | Minus |
| arm_3R | 18828564..18828735 | 162..333 | 100 | <- | Minus |
| arm_3R | 18832317..18832403 | 75..161 | 100 | <- | Minus |
| arm_3R | 18833724..18833789 | 9..74 | 100 | | Minus |
