UFO07653.5prime Sequence
1106 bp (1006 high quality bases) assembled on 2011-07-08
> UFO07653.5prime
CAGTCGACATGGTTTCGGAGGAGAACTGGAATAGCGACACGATGTCCGAC
TCGGACATGATCGACTCAAAGAACGACGTCTGTGGCGGAGCCTCCAGTTC
CAGCGGCAGCTCGATTTCGCCGAGGACACCACCGAACTGCGCCCGCTGCC
GCAATCATGGCCTAAAGATCACCCTAAAGGGACACAAGCGGTACTGCAAG
TTCCGCTACTGCACGTGCGAGAAGTGCCGACTGACGGCGGACCGCCAGCG
GGTGATGGCTCTGCAAACGGCCTTGAGGCGAGCCCAGGCGCAGGATGAGC
AGCGGGCGCTGCACATGCACGAGGTGCCGCCTGCCAATCCGGCGGCCACG
ACCCTCCTGAGTCATCACCATCATGTCGCAGCTCCCGCTCATGTCCACGC
CCACCATGTGCACGCCCATCACGCACACGGAGGACACCACTCGCATCACG
GACATGTCCTGCACCACCAGCAGGCAGCGGCGGCCGCAGCAGCAGCTCCG
TCGGCTCCAGCCTCCCATCTGGGTGGCTCCAGCACGGCCGCTTCCAGCAT
CCACGGTCACGCCCACGCGCACCACGTCCACATGGCAGCTGCTGCAGCCG
CCTCGGTGGCTCAGCACCAGCACCAAAGCCACCCACACTCGCACCACCAC
CACCACCAGAACCACCACCAGCATCCGCATCAGCAACCGGCCACGCAGAC
CGCCCTGCGATCTCCGCCGCACAGCGACCATGGTGGCAGTGTGGGTCCGG
CCACCAGCAGCTCCGGCGGTGGAGCACCCAGTTCCAGCAATGCGGCAGCG
GCCACCTCGAGCAACGGATCCAGCGGCGGTGGAGGAGGAGGCGGACGGGG
CAGCTCGGGTGGCGGGGCAGAGTGGTAGTCATCGGGACATCGGTGATCAC
TAGCGCCGATCACACATGACCACGTTGCCTACGCCCGCCCAATCGCTGGA
GGGTCTGCGACTCGTCGTCGCCCTCGCGTCGTCCACTCCGGTGCAGCATT
TTGCGATCTCAGTTCGGTCATCGAAGACGCGCCATTGTGCCTTGGCAGAC
GTTTCTAGACATTGGCCAAAGCTATAAAAATCCGCTATCTGGGACTGAGC
ATCAGT
UFO07653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-RF | 6941 | CG11094-RF | 1263..2371 | 8..1089 | 4820 | 97 | Plus |
| dsx-RE | 4010 | CG11094-RE | 1263..2371 | 8..1089 | 4820 | 97 | Plus |
| dsx-RD | 3621 | CG11094-RD | 874..1982 | 8..1089 | 4820 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7959808..7960806 | 997..8 | 4555 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-27 00:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2384 | 612..689 | 174 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6889 | 585..689 | 162 | 64.8 | Plus |
UFO07653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:18 Download gff for
UFO07653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RC | 874..1916 | 8..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:27 Download gff for
UFO07653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RD | 874..1916 | 8..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:18 Download gff for
UFO07653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RD | 874..1916 | 8..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:18 Download gff for
UFO07653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7959830..7960806 | 8..977 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:27 Download gff for
UFO07653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3785552..3786528 | 8..977 | 99 | | Minus |
