UFO07654.5prime Sequence
1159 bp (1031 high quality bases) assembled on 2011-07-08
> UFO07654.5prime
CAGTCGACATGGTGAACGTACCGAAACAACGCCGCACCTTCTGCAAGAAG
TGCAAGGTCCACAAGCTGCACAAGGTGACGCAGTACAAGAAGTCCAAGGA
GCGCAAGGGAGCTCAGGGCAGGCGTCGTTACGACAGGAAACAGCAGGGTT
TCGGAGGTCAGACCAAGCCCATCTTCAGGAAGAAGGCCAAGACCACCAAG
AAGATTGTGCTGCGTATGGAGTGCACCGAGTGCAAATACCGCAAGCAGAC
TCCCCTGAAGCGTTGCAAGCACTTCGAGCTGGGCGGTGACAAGAAGCGCA
AGGGACAGATGATCCAGTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCTTGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAG
AGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTACCAGGGTGA
CACTATCCCATATCACAGCTCACCGTTCTTTCATTGCATACGAAATTCCG
GATGAGCATTCATCAGGCGGGCAAGAATGTGATAACGCCGATAAACTTGT
GCTTATTTTTCTTTACGTCTTAAAAGGCGTTAATATCAGCTGACGGTTTG
TTATAGTTCATGAACACTGACTGAATGCCAGTTCCTTACATGCCATGGGA
ATATCAACG
UFO07654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL36A-RB | 514 | CG7424-RB | 85..396 | 9..320 | 1560 | 100 | Plus |
| RpL36A-RA | 457 | CG7424-RA | 35..346 | 9..320 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8042439..8042614 | 186..11 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 8041991..8042127 | 320..184 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:08:05 has no hits.
UFO07654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:19 Download gff for
UFO07654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 24..348 | 1..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:30 Download gff for
UFO07654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 27..351 | 1..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:19 Download gff for
UFO07654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 27..351 | 1..326 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:19 Download gff for
UFO07654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8041991..8042125 | 186..320 | 100 | <- | Minus |
| 2L | 8042440..8042618 | 4..185 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:30 Download gff for
UFO07654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8041991..8042125 | 186..320 | 100 | <- | Minus |
| arm_2L | 8042440..8042618 | 4..185 | 98 | | Minus |
