UFO07655.5prime Sequence
1162 bp (1057 high quality bases) assembled on 2011-07-08
> UFO07655.5prime
CAGTCGACATGGCGGCCAAGAGCGATATGGATATTCTGGCCAACTCCATG
TACGAGGACGATCCCAATGGCAACCTAGCGCCCGCCACCACCAAGGATAA
GGAATCAGTCAAGCCGGAGGAGCTGAAGGTCACCCCCGCTGGCACCAAAG
CAACATCCCCCCCCAACTCGGCGACCTTAGTTTCGACTTCTCCGCGATGG
GGTCCGCAGAATAAGGGCGCCCAGGAACTAGCCTTGTTGTACAGTCCAGG
AAAACGTGCCCAGGAAATCATTTGCGTCTACACCTGCATTGGCCTTATGA
TCATTAACCTAGCCCTGATTGTTAGACACTTGCGATTGGAGCGGATTAGT
GTCGCCTTTCTGTCCGCCCTGTGCGGCATTATAACGGCCGACTTTGCTTC
CGGCTTGGTTCACTGGGCGGCAGACACCTGGGGATCGGTGGACATACCGA
TGATTGGAAAGAACTTCCTGCGACCCTTTCGCGAGCATCATCTGGATCCC
ACATCCATAACGCGACACGATTTCATTGAGACAAATGGCGACAACTTTAT
GGTTGGCATACCAATTCTCGGCTACTTGGCCCACTATTTTTACATCAGGA
CGCCCAGCGAGATACAGCAACACTTCGGCTGGATAGCCTATGTGTTCCTC
TGCTCCATATTCGTGGCCATGACCAATCAGATACACAAGTGGTCGCATAC
CTATTGGGGATTGCCGAGGTGGGTCCTGTTACTCCAGAGCTGTCACATCA
TCCTGCCACGCAAGCATCATCGCATCCATCACGTGGCGCCACATGAGACC
TACTTTTGCATCACCACCGGGTGGCTTAACTGGCCACTGGAACGCATCAG
ATTCTGGTCAACATTCGAGCTCATCATCGAGCATTTTACGGGCCTCAAGC
CCCGCGATGACGACCTGAAGTGGCCAAGAACTCACAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATATCATAATC
ATATCATATCACAACTAGCCTAGAAGATCCTGGTCATGACTGTGCTGGAT
TCTCACCAATAAAAACGCCGGCCGCACGAGCGTTCTGAACAATCCGAGGG
GAGTTCTGAGTCATACTGATCTATCACAGGATTCAGCATCGAATCCAATA
CGACGCTGCACT
UFO07655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kua-RC | 1859 | CG10723-RC | 594..1523 | 9..936 | 4600 | 99.8 | Plus |
| Kua-RD | 1897 | CG10723-RD | 106..1035 | 9..936 | 4600 | 99.8 | Plus |
| Kua-RB | 1648 | CG10723-RB | 383..1312 | 9..936 | 4600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20100947..20101188 | 9..250 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 20101910..20102130 | 460..680 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 20101628..20101842 | 247..461 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 20102193..20102364 | 679..850 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 20102424..20102498 | 849..923 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:10 has no hits.
UFO07655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:20 Download gff for
UFO07655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RB | 79..1016 | 1..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:31 Download gff for
UFO07655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RB | 375..1312 | 1..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:20 Download gff for
UFO07655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RB | 375..1312 | 1..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:20 Download gff for
UFO07655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20102195..20102364 | 681..850 | 100 | -> | Plus |
| 2L | 20102426..20102513 | 851..936 | 97 | == | Plus |
| 2L | 20100941..20101187 | 1..249 | 98 | -> | Plus |
| 2L | 20101631..20101842 | 250..461 | 100 | -> | Plus |
| 2L | 20101912..20102130 | 462..680 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:31 Download gff for
UFO07655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20100941..20101187 | 1..249 | 98 | -> | Plus |
| arm_2L | 20101631..20101842 | 250..461 | 100 | -> | Plus |
| arm_2L | 20101912..20102130 | 462..680 | 100 | -> | Plus |
| arm_2L | 20102195..20102364 | 681..850 | 100 | -> | Plus |
| arm_2L | 20102426..20102513 | 851..936 | 97 | == | Plus |
