UFO07657.5prime Sequence
1175 bp (1055 high quality bases) assembled on 2011-07-08
> UFO07657.5prime
CAGTCGACATGGCTAAGACACCGGAAAACATAGCCATCGATCAGTTGGAC
AAGGATCAAATTAAGACGTTTTCCGACTTCCTAATGTCCTACAACAAACT
GTCCGAGACGTGCTTCACAGATTGCATACGCGACTTTACAACGCGGGATG
TTAAGGATTCCGAGGAGAAGTGCTCGCTGAACTGCATGGAAAAGTATCTG
AAGATGAACCAACGCGTCTCGCAGCGTTTCCAGGAGTTCCAGGTTATTGC
CCACGAGAACGCACTGGCCATGGCTCAAAAGACTGGCAAACTTGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA
TGGAAAACGGTGTACAAGGTGAACACTATCCCATATCACCAGCTCACCGT
CTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGCAGAATG
TGAATAAAGGCCGGATAACTGGTGCTTATTTTTCTTTACGTCTTTAAAAA
GCCGTAAATATCAGCTGACGTCTGTTATAAGGTACATTTGAACCACTGAC
TGAAATGCCTTCAATGTTCTTACCGATGCCATTGGATTCACGTGATTCAG
GGATTTTTCCATTTAGCTTCCTTAG
UFO07657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tim9a-RB | 461 | CG1660-RB | 73..357 | 9..293 | 1425 | 100 | Plus |
| Tim9a-RA | 516 | CG1660-RA | 128..412 | 9..293 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13385659..13385789 | 163..293 | 655 | 100 | Plus |
| X | 23542271 | X | 13385499..13385596 | 68..165 | 490 | 100 | Plus |
| X | 23542271 | X | 13385337..13385396 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:20 has no hits.
UFO07657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:21 Download gff for
UFO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim9a-RA | 119..412 | 1..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:35 Download gff for
UFO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim9a-RA | 119..412 | 1..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:22 Download gff for
UFO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim9a-RA | 119..412 | 1..293 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:22 Download gff for
UFO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13385328..13385396 | 1..68 | 94 | -> | Plus |
| X | 13385500..13385595 | 69..164 | 100 | -> | Plus |
| X | 13385661..13385789 | 165..293 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:35 Download gff for
UFO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13279361..13279429 | 1..68 | 94 | -> | Plus |
| arm_X | 13279533..13279628 | 69..164 | 100 | -> | Plus |
| arm_X | 13279694..13279822 | 165..293 | 100 | == | Plus |
