UFO07666.5prime Sequence
1093 bp (947 high quality bases) assembled on 2011-07-08
> UFO07666.5prime
CAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGGCTGGGGAG
GAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCGCCCAGTGG
ACGCATTCGAGCCAGCTCCATCGAGATGCGTCTGCTGGAGATGCAGCGAA
AGTTGTCAGCCATTGCCGAAATACCGAAAATCCTGTGCTCCACTTTGGCC
ACCGTGTCGCAGAATTTTGGCCGAATGAGTGAATCGGAGGTGGATGAGGA
TGACGTCGGGGAGGAGGAGGCCTATGTGCAGCGGAAGTTCTCCTACGACG
AGGATGCCCTTGACTTTGAGCTGAGGAACGGGGAACAGGCAGGTGACACT
GACAGTGATGAGGAAGATTTGGTGTTGGTTCGGGAGGAGGATGCTGAGGA
CGTGGATGTACCGAAAGGTGCTTAGCAATCAAAGCTGCTGAAGGATGTCA
CGCCGGAATCGGATTATGCATCGGAAGCCAATTATCCGGCAAATGAGGCG
AGCGATGACACGGAATCCGACGATGAGGATGAGCCGGGCAGCACGGTATA
TTTCATGAAACTGCCAGCGGCCGCCGCCGAGGATACGTATTCTTCTACGG
AGGACGAGGATGACAGCGATTTCCTGAACACCACCTACACGTGGAATCTC
CGCAATGTGCCCAAGCTGCGAATTAACGATGCCGAGGCCGAAGGTGAACT
GACACTGGGACATCAGGCGCGGGAGGTGCCTCAGCAGGAGCAGCCACAGG
AGAAAGCAGCCTTGTCTGGGAACCGGAGCCACCGAAAGTGCGCCCAGCCA
CGCCCACACCGAGGCTCCACCTCAAGAATCCGCCGAGGGGCAGACACAAA
GTTGCTATTCAGACTGGATAACTGGAACGATCCTGGCCCTGGGCAGACCG
CGAGAAGATCATATACAAGCAATCCACTTGCCATTTGGTTGCCACCAAAG
CCACTGGGAATGCTGGGAACGCCGATGGCACTGCCTGCTGAAGACAAAAA
GGAGGTAGCTTTCTAGAACCATTCGTTTGGGCCCGCGGCCCAGGTAAGTG
GTCACTATCCAAGTCTATAAGTCATATTCACTATACCACAAAC
UFO07666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RF | 2046 | CG42319-RF | 250..1247 | 7..1004 | 4615 | 98 | Plus |
| CG42319-RE | 2682 | CG17042-RA | 886..1883 | 7..1004 | 4615 | 98 | Plus |
| CG42319-RD | 1466 | CG42319-RD | 886..978 | 7..99 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13264369..13265119 | 99..850 | 3570 | 99.2 | Plus |
| 2R | 25286936 | 2R | 13262906..13262998 | 8..100 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 13265319..13265389 | 850..919 | 305 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:11:07 has no hits.
UFO07666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:45 Download gff for
UFO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RF | 217..1224 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:49 Download gff for
UFO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 882..1889 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:27 Download gff for
UFO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 882..1889 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:27 Download gff for
UFO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13262900..13262997 | 1..99 | 95 | -> | Plus |
| 2R | 13264370..13265121 | 100..851 | 99 | -> | Plus |
| 2R | 13265321..13265388 | 852..918 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:49 Download gff for
UFO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9150405..9150502 | 1..99 | 95 | -> | Plus |
| arm_2R | 9151875..9152626 | 100..851 | 99 | -> | Plus |
| arm_2R | 9152826..9152893 | 852..918 | 98 | -> | Plus |
