UFO07669.5prime Sequence
1127 bp (1019 high quality bases) assembled on 2011-07-08
> UFO07669.5prime
CAGTCGACATGAGCAGATTTGTTTATAAACTTTTACAGAGTGCAAACCAA
ACTAGTTCGGGCTGCAGACGCATTTCTTTGGCTACTGTAAGAAATGCGGA
AAGCGAATCTCAAGAGGGTGCCCCTGCCCGCACAGTTCTGGTGGAGAAGG
ACTCGCACATAACACTTATTGGCCTAAATCGCGAGCAGCAGCGTAATTCC
ATTGATGCCAACACCGCGGAGCAGCTGACCGAAGCCATTAGCCAATTCGA
AGCGGATGATACTTCTCCAGTGGGTGTGCTCTACGGCATAGGTGGCTCCT
TTTGTGCAGGCTATGATCTGGAGGAGCTAGAGGCGGAGGCGCAACGCGGC
AGCCTCAACTTTCTGTTGCGTCACGAGGGCTCCGTCGGACCAACTAGGCG
GCATCTCCGCAAGCCACTTGTTTGCGGCATCAGCGGTTTCTGTGTGGCCG
GTGGATTGGAACTGGCTCTAATGTGCGATCTCCGGGTGATGGAGGACACT
GCAGTTCTGGGGTTCTTCAACCGTCGCCTTGGAGTTCCCCTGAGCGATGG
TGGAACTGTGCGGCTGGCCGCTGCAGTGGGTTACTCCAATGCCTTGGAGA
TCATCGCAACTGGAAGACGCATCTACTCTGGGGAGGCGCGGCGAATCGGT
TTAGTGAATCGCGTTGTGGCCACAGGCACAGCTTTAGGTCAAGCTGTTAA
TCTGGCCTTTTCCATTGCCAAGTTCCCCATGGCTTCCCTAATGCACGACA
GGAATGCTGTGCTTGAAAATGCCAATGCCTACAACAAACCAGGATTCCAT
GTGGCCAGTTACAATGAGATCATGAATGTTACCTCAGATATGATAACAGA
TATGCAGGAGGGCGTGAAGCGTTTCAAGAACTCTGAATAAAGGGCCCCAA
AACCGATTCGTGAGCATAAAGGAGAAACCATTCCAGATTGGGAAAGCCGA
AATCGAGATCGAAAAACAAAAGCAAAAGACAGCAGCTTTCTAGACATTCG
TTTGGCCGCGCGGGCCCAGGTAAGTGTCATAATCATATCATATCATATTC
ATATCCATCTAGCTAGGAAATCTGTATGACTATTGCTTGGAATTCCACAA
TAAAACGCCCGGCGCAACCGACGTTTG
UFO07669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5611-RC | 1375 | CG5611-RC | 22..999 | 9..981 | 4775 | 99.5 | Plus |
| CG5611-RA | 1096 | CG5611-RA | 22..999 | 9..981 | 4775 | 99.5 | Plus |
| CG5844-RA | 1355 | CG5844-RA | 554..632 | 457..535 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27635162..27636039 | 886..9 | 4375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 27635001..27635100 | 981..886 | 335 | 96 | Minus |
| 3R | 32079331 | 3R | 12434783..12434861 | 457..535 | 200 | 83.5 | Plus |
Blast to na_te.dros performed 2014-11-27 00:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 896..952 | 1042..1097 | 111 | 68.4 | Plus |
UFO07669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:48 Download gff for
UFO07669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..979 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:55 Download gff for
UFO07669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..979 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:32 Download gff for
UFO07669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..979 | 1..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:32 Download gff for
UFO07669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27635021..27635104 | 883..961 | 94 | <- | Minus |
| 3R | 27635166..27636046 | 1..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:55 Download gff for
UFO07669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23460743..23460826 | 883..961 | 94 | <- | Minus |
| arm_3R | 23460888..23461768 | 1..882 | 99 | | Minus |
