UFO07670.5prime Sequence
1172 bp (1038 high quality bases) assembled on 2011-07-08
> UFO07670.5prime
CAGTCGACATGTACCTACTACCTGGTAGTCTACTCCTGCTGATCTTTAGC
TTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAATAATACTGA
GGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCACATTGAGCA
ACTGCACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGTTTGATCAT
CTGCTTCATTTAGAACTGCAGCACAGTGGACTGAGTGATTTAGATGATTT
TTCACTGAATGGCTTGACAAAGTTACAATACCTTTCCCTGTCCCACAACA
ATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCCTTTGGGTGCATTAACC
AATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTCAAGAGCTT
TGAGCAATATCCCCAGTTGCAACAGCTCGACTTGCGTTACAATCGGATTA
GTCAAATAGAGAATGACTCCTTTGATGGATTATCTCATTTAAAGCATCTT
TATCTGAACGGAAACCAACTGGCGCACATAGATGGTAGTTTCTTTCGGGG
TCTTCATCGGCTATCCAGTTTATCACTGCAGCACAATCGCATTGAGTTCA
TAGAAATGGATTCGTTTGAGAGTAATACCCATCTTCGAAGTCTACGGCTG
GACCAAAATCTCCTGAGCAGTCTTCAGTTTCTCAGTCAACGAGGTTTGGC
TCGACTGGTTCACTTGAATCTATCGAGTAATCTGCTACAAAAATTGGAGC
CATTTGTATTTTCCAAAAACTTTGAGCTGCAGGACCTAGACTTGAGTTAT
AATAACATAACTAAGCTCAACAAGGAAGCATTATCGGGATTGGATTCTTT
GGAGCGCCTCAACATAAGTCATAACTATGTGGATAAAATATATGACGAAA
GCCTGGACTCCCTAATCGCTCTTCTTCAACTAGATATTAGCTTCAACCTT
CTGACCACACTGCAGATTATTTATTCCATTTCCACACTCAATTGGAGAGA
TTATCCTTGCTAATAACAAAATAGAAGGAGATATTCCTCTTCCAGATGAT
GTTCAATCCAAAATCATTTAGAATACATTTAAATTGTCGGAATGCCAATC
AATTGATGCCGCTTTCCTGAACAGCTTCCTCCCATCGGTGATTCGTTACC
TCTCTACTGAATCCTCAGTTCG
UFO07670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18095-RB | 1838 | CG18095-RB | 6..1166 | 9..1172 | 5270 | 97.5 | Plus |
| CG18095-RC | 1677 | CG18095-RC | 6..1166 | 9..1172 | 5270 | 97.5 | Plus |
| CG18095-RA | 2036 | CG18095-RA | 6..1166 | 9..1172 | 5270 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14030689..14031534 | 854..9 | 4230 | 100 | Minus |
| 2L | 23513712 | 2L | 14030273..14030506 | 1090..853 | 775 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:10:45 has no hits.
UFO07670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:42 Download gff for
UFO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RB | 2..1134 | 5..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:39 Download gff for
UFO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RA | 2..1134 | 5..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:18 Download gff for
UFO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RA | 2..1134 | 5..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:18 Download gff for
UFO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14030222..14030504 | 855..1141 | 92 | <- | Minus |
| 2L | 14030689..14031538 | 1..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:39 Download gff for
UFO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14030222..14030504 | 855..1141 | 92 | <- | Minus |
| arm_2L | 14030689..14031538 | 1..854 | 99 | | Minus |
