UFO07675.5prime Sequence
1172 bp (1063 high quality bases) assembled on 2011-07-08
> UFO07675.5prime
CAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACA
ATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCCATTGCCTA
TCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGGCAACGTGA
CCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCGTCCAGCTG
GAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAGAAGGGAGA
TCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCCCGATAAGG
TTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCGATCTGGGC
AACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATACACGGATCA
GGTGATCACCTTAACTGGCAAGTTGGGGATCATTGGCAGGGGAGTTGTTG
TCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGGATTCCAAG
AAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATTGGCATCAA
CTCGGATGTGGACGAGTGGCCATGTCGCGATGGTGGCGCCGGCGCCCTGC
GCTACTCCTTCTCCATCCTGACCGTCATCGTGGCCCTCATCATGGCCCGC
AGCCTTGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGTAAGCCATCACAAACGGCATGATGAACCTGATCGCAGCGGCATC
AGCACCTGTCCGCCTTGCGTATAATATTTGCCCATGTGAAAACCGGGGGG
CGAAAAAGTTGTCCATATTGCACGTTTTAATTCAAAACCTGGTGAACTCC
ACCAGGATGCCTGAGAAACGAAAAAACAATTTCCAATAACCGTTACGAAT
GCAAGTTTCACCGTAACCACGC
UFO07675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RD | 1095 | CG9027-RD | 107..757 | 9..659 | 3240 | 99.8 | Plus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 9..550 | 2695 | 99.8 | Plus |
Sod3-RA | 896 | CG9027-RA | 107..648 | 9..550 | 2695 | 99.8 | Plus |
Sod3-RE | 1228 | CG9027-RE | 884..992 | 551..659 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 305..71 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 528..298 | 1140 | 99.6 | Minus |
2R | 25286936 | 2R | 11380685..11380793 | 659..551 | 545 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382311 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2346..2418 | 559..629 | 126 | 65.8 | Plus |
UFO07675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:49 Download gff for
UFO07675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RD | 91..754 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:59 Download gff for
UFO07675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RD | 97..760 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:36 Download gff for
UFO07675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RD | 97..760 | 1..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:36 Download gff for
UFO07675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11380682..11380793 | 551..663 | 98 | <- | Minus |
2R | 11381573..11381594 | 529..550 | 100 | <- | Minus |
2R | 11381663..11381891 | 300..528 | 99 | <- | Minus |
2R | 11381955..11382182 | 72..299 | 100 | <- | Minus |
2R | 11382249..11382320 | 1..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:59 Download gff for
UFO07675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7268187..7268298 | 551..663 | 98 | <- | Minus |
arm_2R | 7269078..7269099 | 529..550 | 100 | <- | Minus |
arm_2R | 7269168..7269396 | 300..528 | 99 | <- | Minus |
arm_2R | 7269460..7269687 | 72..299 | 100 | <- | Minus |
arm_2R | 7269754..7269825 | 1..71 | 95 | | Minus |