Clone UFO07675 Report

Search the DGRC for UFO07675

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:76
Well:75
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9027-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07675.5prime Sequence

1172 bp (1063 high quality bases) assembled on 2011-07-08

> UFO07675.5prime
CAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACA
ATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCCATTGCCTA
TCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGGCAACGTGA
CCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCGTCCAGCTG
GAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAGAAGGGAGA
TCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCCCGATAAGG
TTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCGATCTGGGC
AACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATACACGGATCA
GGTGATCACCTTAACTGGCAAGTTGGGGATCATTGGCAGGGGAGTTGTTG
TCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGGATTCCAAG
AAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATTGGCATCAA
CTCGGATGTGGACGAGTGGCCATGTCGCGATGGTGGCGCCGGCGCCCTGC
GCTACTCCTTCTCCATCCTGACCGTCATCGTGGCCCTCATCATGGCCCGC
AGCCTTGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGTAAGCCATCACAAACGGCATGATGAACCTGATCGCAGCGGCATC
AGCACCTGTCCGCCTTGCGTATAATATTTGCCCATGTGAAAACCGGGGGG
CGAAAAAGTTGTCCATATTGCACGTTTTAATTCAAAACCTGGTGAACTCC
ACCAGGATGCCTGAGAAACGAAAAAACAATTTCCAATAACCGTTACGAAT
GCAAGTTTCACCGTAACCACGC

UFO07675.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RD 1095 CG9027-RD 107..757 9..659 3240 99.8 Plus
Sod3-RE 1228 CG9027-RE 107..648 9..550 2695 99.8 Plus
Sod3-RA 896 CG9027-RA 107..648 9..550 2695 99.8 Plus
Sod3-RE 1228 CG9027-RE 884..992 551..659 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 305..71 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 528..298 1140 99.6 Minus
2R 25286936 2R 11380685..11380793 659..551 545 100 Minus
2R 25286936 2R 11382249..11382311 71..9 315 100 Minus
Blast to na_te.dros performed 2014-11-27 00:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 2346..2418 559..629 126 65.8 Plus

UFO07675.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:49 Download gff for UFO07675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-RD 91..754 1..663 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:59 Download gff for UFO07675.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RD 97..760 1..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:36 Download gff for UFO07675.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RD 97..760 1..663 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:36 Download gff for UFO07675.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11380682..11380793 551..663 98 <- Minus
2R 11381573..11381594 529..550 100 <- Minus
2R 11381663..11381891 300..528 99 <- Minus
2R 11381955..11382182 72..299 100 <- Minus
2R 11382249..11382320 1..71 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:59 Download gff for UFO07675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7268187..7268298 551..663 98 <- Minus
arm_2R 7269078..7269099 529..550 100 <- Minus
arm_2R 7269168..7269396 300..528 99 <- Minus
arm_2R 7269460..7269687 72..299 100 <- Minus
arm_2R 7269754..7269825 1..71 95   Minus