UFO07676.5prime Sequence
1188 bp (1066 high quality bases) assembled on 2011-07-08
> UFO07676.5prime
CAGTCGACATGCAGCAACAGGATCAGCACCTGGACAAAAACAAGCAGAAG
CGCCACCGCACCCGCTTCACGCCCGCCCAGTTGAACGAGCTGGAGCGCTG
CTTCTCGAAGACGCACTATCCGGACATCTTCATGCGCGAGGAGATCGCCA
TGCGGATTGGCCTCACTGAGTCCCGCGTTCAGGTCTGGTTCCAGAACCGC
CGTGCCAAGTGGAAGAAGCGCAAGAAGACAACCAATGTCTTCCGCACCCC
GGGCGCCCTGCTGCCCTCCCATGGACTTCCGCCGTTTGGGGCCAATATAA
CCAATATCGCCATGGGCGATGGTCTCTGTGGCACGGGAATGTTTGGCGGA
GATCGCTGGAGCGTGGGTGTCAATCCAATGACGGCAGGCGACTCCATGAT
GTACCAGCACAGTGTGGGCGGATTCAGTTGTGGGCCCAGTGGTTCGCCGA
GCGCCACCACCCCGCCGAACATGAACAGCTGCTCCTCGGTGACCCCGCCG
CCACTTTCCGCGCAGCCGAACTCCAGCCAAAACGAGCTGAACGGCGAGCC
CATGCCGCTGCACCAGCAGCAACAACAACAGACTCACCAACATCAGCAAC
AGCAAACTCACCAACACCACCCGATGGCGCCACCAACACCCACACAGCAA
CAGCAGCAGCTTCCGCAGTCTATGCAGTCGCCGTCAGATGGCGCCAACGA
CACACTCCACAGCATCGCAGCGCTGCGGCGGCGGGCGTCCGAACTAAATG
CGATTCCTTCCTACCTACAGATGGCGCCACACAACTACGAACACTACAAT
TCGAATTCCAATTCGGTCTACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCACAGGAGTCAAGCGAGCTCGATAT
CAATTACGCCCCCGCCCTGCCACTCATCGCAAGTAACTTGTTGTTATTTC
TTTAAGCATTCTGGCGAACTGAAGCACATATCTAACACAGAAACTGGGCA
TGATGAACATGGAATCGCCCGAGCGGTACATATATCAG
UFO07676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-RJ | 2856 | CG10036-RJ | 1173..1986 | 8..821 | 4055 | 99.9 | Plus |
| otp-RC | 2347 | CG10036-RC | 664..1477 | 8..821 | 4055 | 99.9 | Plus |
| otp-RI | 2835 | CG10036-RI | 1189..1965 | 45..821 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20884495..20884762 | 821..554 | 1340 | 100 | Minus |
| 2R | 25286936 | 2R | 20886522..20886730 | 388..180 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 20885202..20885372 | 554..384 | 840 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20895709..20895869 | 184..24 | 805 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6878 | 562..716 | 244 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2484 | 540..721 | 240 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2511 | 540..729 | 235 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6913 | 513..683 | 230 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6858 | 530..667 | 229 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6934 | 512..679 | 224 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6835 | 555..668 | 209 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2535 | 555..721 | 206 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..3026 | 468..683 | 192 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 571..660 | 191 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 573..660 | 189 | 73 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1164 | 546..661 | 187 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2511 | 512..660 | 183 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6814 | 572..668 | 178 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6992 | 512..716 | 178 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2889 | 545..716 | 175 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2902 | 523..714 | 173 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2709..2979 | 467..721 | 171 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2534 | 524..623 | 166 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1165 | 504..614 | 159 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1612 | 508..621 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2539 | 558..644 | 153 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2977 | 513..667 | 152 | 58.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8018 | 542..618 | 148 | 67.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..577 | 553..619 | 148 | 71.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9462 | 542..618 | 148 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1151 | 535..621 | 146 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2665 | 589..658 | 142 | 70.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3342 | 524..634 | 141 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 567..646 | 138 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6923 | 510..603 | 136 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1600 | 564..620 | 127 | 72.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..195 | 558..604 | 127 | 74.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9225 | 558..604 | 127 | 74.5 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2066 | 564..621 | 121 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6570 | 579..622 | 114 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2685 | 560..612 | 112 | 67.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3336 | 555..603 | 110 | 69.4 | Plus |
UFO07676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:50 Download gff for
UFO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 657..1484 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:02 Download gff for
UFO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 658..1485 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:37 Download gff for
UFO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 658..1485 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:37 Download gff for
UFO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20884487..20884761 | 555..830 | 98 | <- | Minus |
| 2R | 20885202..20885368 | 388..554 | 99 | <- | Minus |
| 2R | 20886523..20886727 | 183..387 | 100 | <- | Minus |
| 2R | 20895711..20895866 | 27..182 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:02 Download gff for
UFO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16771992..16772266 | 555..830 | 98 | <- | Minus |
| arm_2R | 16772707..16772873 | 388..554 | 99 | <- | Minus |
| arm_2R | 16774028..16774232 | 183..387 | 100 | <- | Minus |
| arm_2R | 16783216..16783371 | 27..182 | 100 | <- | Minus |
