UFO07678.5prime Sequence
1160 bp (1013 high quality bases) assembled on 2011-07-08
> UFO07678.5prime
CAGTCGACATGCTGTTGATGCCCACATCCTGTGGGCCGGGTCCACCCAAC
GACCACGGCCCCATGTCCTTGCCCACTTCCTCCCCCTCCTGCTCCAAACG
CGCCCGCATACCCACGCGAGCGGCAGATGATGATGAGCCGTTGCGGCGGT
CAGGGACCCTAACCCAAAGGCAAAGTTCGGGGTCGGGCATTCCCCAATGG
CTGCTAATCCTCATCGGACTCCTCGCCATTCTCGCCCAGACACCAGGCAG
CCAGGTGGCCGCCGAGAAGAGTAAACACTATTACATGCAGTCGCTGTGCA
AGAACCACTTCCTCCAGCAGCTGTACCGAAAGATCGATGGAGCGGTGCTC
TGGTCACAGAACGAGCGGAATCTGGACTGCATTATCACCTTCCAGACGCA
CTCGGTGCTGCAGCGCTTCATGTTCCGCTTCGACATGCTGCAGTTGGACT
GCAACGATCACCTGCTGGTTTACGATGGCGCCCACGCCGTCGCCACGCCC
AAGATTGACATCTCCTGTCGGAACACAAAGAACACCGTCAACGCGCTCCT
GACGCGCACGAACTTTGTGACACTGAAGTACGTGACCGATGGCTGGGGAA
CGGATGCGAACGGCTTCAAGCTGGTGATTACGTCGGTGAAGGATCCCAAG
CACACCTGCAAGGACTTCACCTGCGCCACCCGCGAGTTCTGCATCCATCC
CGATCTCCTCTGCGATGGCATCAACCACTGCGGCGACAACTCCGACGAAT
CCGTGCAGAATCTGTGCCAGAATGAGACGAGCAGCACGGGTTTTGGCCTG
GACATGACCTGTTTCGTCCTCATTGTCGTCGGTGTGCTGCTCGTCCTGAG
CGCGCTCATCGTGGCAGTGGCCATTTGTGTGTGCCGGCGACAGGATGAGA
ATGCCGCCAACCAGAACACCGCGCTCCAAGTGCACCATACGGCCGACACG
AACGGGTCGTCGAATCATCTGCACTACCACGGCATCAGTGTCGGCGGGAC
ATTGACGCGGGAGCCCACCCAAACTGCCGACGTCGGGAAACCTGGCATCA
CCCCTGGCGGACCCATCCGGTTACACGGACTCCACACAACTTACTTGGAG
ATGCACCAAGGTCCGTTCCATTTGTGCTGCATTCGGTCATGCAAGCTTTC
TAGACATTCG
UFO07678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6024-RF | 4932 | CG6024-RF | 408..1522 | 9..1124 | 5190 | 98 | Plus |
| CG6024-RC | 3123 | CG6024-RC | 546..1660 | 9..1124 | 5190 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11759626..11759896 | 279..9 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 11743806..11744029 | 503..280 | 1105 | 99.6 | Minus |
| 3L | 28110227 | 3L | 11737349..11737507 | 930..772 | 765 | 98.7 | Minus |
| 3L | 28110227 | 3L | 11737785..11737931 | 648..502 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 11737581..11737708 | 776..649 | 625 | 99.2 | Minus |
| 3L | 28110227 | 3L | 11737163..11737285 | 1053..929 | 480 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:47 has no hits.
UFO07678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:50 Download gff for
UFO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 538..1652 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:05 Download gff for
UFO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 538..1652 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:39 Download gff for
UFO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 538..1652 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:39 Download gff for
UFO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11759626..11759901 | 1..279 | 98 | | Minus |
| 3L | 11743806..11744029 | 280..503 | 99 | <- | Minus |
| 3L | 11737349..11737507 | 772..930 | 98 | <- | Minus |
| 3L | 11737586..11737708 | 649..771 | 100 | <- | Minus |
| 3L | 11737785..11737929 | 504..648 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:05 Download gff for
UFO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11730885..11731029 | 504..648 | 100 | <- | Minus |
| arm_3L | 11736906..11737129 | 280..503 | 99 | <- | Minus |
| arm_3L | 11730449..11730607 | 772..930 | 98 | <- | Minus |
| arm_3L | 11730686..11730808 | 649..771 | 100 | <- | Minus |
| arm_3L | 11752726..11753001 | 1..279 | 98 | | Minus |
