UFO07679.5prime Sequence
1142 bp (1024 high quality bases) assembled on 2011-07-08
> UFO07679.5prime
CAGTCGACATGAATCTGTTAGACTTGCCACAAACACTAATTCAGGACATT
TTGGAGTTGCTCCCCTACGACGAGGTGGCAAAAAAACGAGAGGTGTGCAC
TCTATTTAATTATCTTGGGCAGCAAATATTAAACAAGGGTTTTAACAAGA
TCATTATGGCCCATGCCAAGAACTTCAAGCGCATCAAATCCATGCTGCCA
CGACGGGAATCGGAACGCAGGAACCACATTCTATCCCGCCACTCGGACAT
ACTTACCTCGATCGAAACACGGATCTCGATGCTGACCATGACGTACTCCA
AGTTTATTGACCTCAACATCTGCTGTTTCATACCTGGTCGCGTTCTGGAC
GAGATCAACAGCATCCTGCGCATTTTGAGCACCTCCACTAAACAGCTGCG
ACCACATGAAGTGCTGCAGGAGCTGCGCGACATCTCCTCCATGGCCATTG
AGCATTTCGACGAAAAGATTGCTGTGAATTTCAAATTGGAACACCGAAAA
CAATTGGCGGAATCCACGGCGGCCGGAGCTCGACTTGTGGTTTGCAGTGC
CTTGGGCGACATAAGCTTTAGTGGCGTAAGGCGAACCGGAATCAGTCGTC
CCGTAGATCATGGGCTCGTCCAGCAGGCTATCGTTCAGTTGGCCCCCATA
TCTGCCAGCAAATCACACTCTGATTCCTCTCAAAAGGATCGCATGTCTAA
ACAACTGTTCAAGCAATACCAGCTCCAAAGGTCACTTTCGCAAAAGATTC
GCCTCTTGGAAGTGTCGCGCAAGGTGCAGATCGCCGATTGCAGGAACCCT
ATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTTAAGCGCCAAA
TGGAGGATGTGGTGGCCAATATGCCCAGTTGCGCTGTTAAACGTCAGGCT
GTCGCCAGCGCGGACTGCTTACCACCGGCCCTGAAAAAACCCAAAGGTGG
CAAGCTTTCTAGATCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
TATCATATCATTAATCATAATCATATCACACTAGCCTAGAGAATCCTGGT
CTTGACTAGTGCTGATCCTCAACCATTAAAAACGCCCGGCGGCAACCGAC
GGTTCTGAACAATCGGAATGGAATTTCTGTGAGTCATTACTG
UFO07679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 1206 | CG3428-RA | 87..1024 | 9..944 | 4640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9486630..9487358 | 944..218 | 3545 | 99.7 | Minus |
| 3L | 28110227 | 3L | 9487424..9487554 | 221..91 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 9487618..9487704 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:52 has no hits.
UFO07679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:51 Download gff for
UFO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 58..1009 | 2..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:07 Download gff for
UFO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 81..1032 | 2..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:40 Download gff for
UFO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 81..1032 | 2..955 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:40 Download gff for
UFO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9486630..9487355 | 221..944 | 99 | <- | Minus |
| 3L | 9487425..9487552 | 93..220 | 100 | <- | Minus |
| 3L | 9487621..9487710 | 2..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:07 Download gff for
UFO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9480721..9480810 | 2..92 | 95 | | Minus |
| arm_3L | 9479730..9480455 | 221..944 | 99 | <- | Minus |
| arm_3L | 9480525..9480652 | 93..220 | 100 | <- | Minus |
