UFO07681.5prime Sequence
1126 bp (1062 high quality bases) assembled on 2011-07-08
> UFO07681.5prime
CAGTCGACATGGCCACAACCTGCATGCCGCATTTCACGGAATATTTTCAA
ACCACCACCCAGTCAGAGTTAACAACAAATGAAAGTGCCAACAGCAGAAG
CAGCAGCAGCAGCAGTGGCTGTAGAGAACCGTCCAAAACCAGTGGCTTCT
TCTACAGCGCCAGCACACATTACCAGAGCAAAGTGCAGCAGCTAATCAGC
TTCAGCTTCACCTCATCGTTCCACCTGCTCTTCATCACCTGCATACTGAG
CATCAGCAAATTCTGCAATGCGGCGGCGGTAAATGCCGCCCATGTGACCG
CTGCCACGCCCACTGCCAGCGAGATAATGCACAATCTGAGCGGATCGGCG
CTGCTAGAGCGTCTGAAAGCCAGTACTCTGGGACCCACCCTCGATCAGCT
GAAGCATCTGGCTCCTGCGGCAGCCAACAGCATTAGTCCTGGTACAGGAT
CTGGCATGGGAATCGGGATGGGACACTTTGGCAGTTCCATTAATTCGGTG
CTAAACGGAAATCCTTTAAAGTTCTTGAATGTGTCAGGAAAAATCGGCAC
TCCTTTGGACATATCTCTCGGTCTGAGCAACTACTGCGATGAGAAGCAGT
TCCAGTGCTCCACCGGCGAATGTATCCCCATACGGTTCGTGTGCGATGGC
TCCTCGGATTGCCCGGACCACAGTGATGAGCGGCTGGAGGAGTGCAAGTT
TACAGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAAGT
GCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCGCCGATGGA
AGCGATGAATCGACGTCCCAGTGCCTTGAAACAAAAACTGGAAACAACCG
CACAGACACATCTAACCAGGTCCACAAATCTGATGCCGAATCAGAAAATG
ATTACGTCGAATAGCCTTGCATGTGATTGCCAGTTTAGCGGGCACAGCTT
TAGTAGCAAGCGTCATCTATGTCGTATACCGACGCTGCACGCGCGCCGTG
AACTCGATGACTTCGAGAATCCCGGTCTACACAAGGACCCACAGGAGGAC
CACTTCAGTCTTGGAAAAGAATGGACGCCCACCACATTAACGCCGTAGTC
ATGGGCGAGGGGGGCGTCAATCGTCT
UFO07681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RD | 2634 | CG31092-RD | 234..1342 | 9..1120 | 5170 | 98.2 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 234..1050 | 9..825 | 4085 | 100 | Plus |
| LpR2-RE | 4189 | CG31092-RE | 234..1050 | 9..825 | 4085 | 100 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 3100..3391 | 826..1120 | 1085 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25739055..25739610 | 564..9 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 25722416..25722556 | 705..565 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 25701523..25701661 | 963..826 | 645 | 99.3 | Minus |
| 3R | 32079331 | 3R | 25713842..25713964 | 825..703 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25701392..25701455 | 1024..962 | 270 | 98.4 | Minus |
| 3R | 32079331 | 3R | 25754348..25754465 | 702..585 | 245 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:57 has no hits.
UFO07681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:52 Download gff for
UFO07681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1323 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:10 Download gff for
UFO07681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1323 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:42 Download gff for
UFO07681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1323 | 9..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:42 Download gff for
UFO07681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25701525..25701661 | 826..961 | 99 | <- | Minus |
| 3R | 25713842..25713961 | 706..825 | 100 | <- | Minus |
| 3R | 25722416..25722556 | 565..705 | 100 | <- | Minus |
| 3R | 25739055..25739610 | 9..564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:10 Download gff for
UFO07681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21548138..21548278 | 565..705 | 100 | <- | Minus |
| arm_3R | 21527247..21527383 | 826..961 | 99 | <- | Minus |
| arm_3R | 21539564..21539683 | 706..825 | 100 | <- | Minus |
| arm_3R | 21564777..21565332 | 9..564 | 100 | | Minus |
