UFO07683.5prime Sequence
1103 bp (1015 high quality bases) assembled on 2011-07-08
> UFO07683.5prime
CAGTCGACATGAATGCAAAAAGAAGTATGTTGACATTCCAAAGGACGAGG
GACAACGATATGGAACCAGAGTCCTACTGGCTGAATCCGCTCTCATTCAT
TTTAGCCGATATGTTCGACGACTTGGCGGAGAACTTAAGGCGGGGAGTTA
TTACCTTTTTTTGGGACCCCGAGCTGAACATGATCGACGCATTGACCCGG
GATCAAGTTTGGGAAATGTACCTGTGCGTGCAAAGGATTCCAAGAGACCT
GAGGGGCGCAGAGATCAGCCGGAATAAATGGAGTTTTTTCGTACTTCGGG
AATTCAGTCACAAAAAGGAAAGAAATGTAAATCTAAAGTGCAGCTCTAGG
CGAAAACGAAATGTTATTAAGGGACTGAAGACCACTTCAATTTGCAAGCT
AAGAAATGCTCGAACTATCGTTACCTGGACTGCTGGACTTTGGACTCGAC
CCGGCCATGCGTACAGAGGCCCATCGGAAACGGTGTCGACTTGGGACACA
GTAAAGGACGCAGCGTGGTCAGAAGGGATTGTGGAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TATATTTGCCCATGGTGAAACGGGGGCGAAGAGTGTCCATATGGCCACGT
TTAATCAAACTGGTGAACTCACCCAGGATGCTGAACGAAAACATATTCTC
ATAACCCTTTAAGGAATAGCAGCTTCACCGTACCCGCCCACATCTGCAAT
ATTGGTTAGAACTGCCGGAATCCGTCTGAATTCACTCCGAGCGATGACAC
GTT
UFO07683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-RB | 910 | CG30424-RB | 99..626 | 9..536 | 2610 | 99.6 | Plus |
| CG30424-RE | 946 | CG30424-RE | 188..662 | 62..536 | 2345 | 99.6 | Plus |
| CG30424-RD | 1713 | CG30424-RD | 955..1429 | 62..536 | 2345 | 99.6 | Plus |
| CG30424-RE | 946 | CG30424-RE | 99..152 | 9..62 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24965559..24965788 | 536..307 | 1120 | 99.1 | Minus |
| 2R | 25286936 | 2R | 24965844..24966041 | 308..111 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 24967146..24967200 | 63..9 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 24966106..24966154 | 110..62 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:28 has no hits.
UFO07683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:48 Download gff for
UFO07683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 83..617 | 4..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:57 Download gff for
UFO07683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 96..630 | 4..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:34 Download gff for
UFO07683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 96..630 | 4..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:34 Download gff for
UFO07683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24965559..24965788 | 307..536 | 99 | <- | Minus |
| 2R | 24965846..24966041 | 111..306 | 100 | <- | Minus |
| 2R | 24966106..24966153 | 63..110 | 100 | <- | Minus |
| 2R | 24967147..24967203 | 4..62 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:57 Download gff for
UFO07683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20853082..20853311 | 307..536 | 99 | <- | Minus |
| arm_2R | 20853369..20853564 | 111..306 | 100 | <- | Minus |
| arm_2R | 20853629..20853676 | 63..110 | 100 | <- | Minus |
| arm_2R | 20854670..20854726 | 4..62 | 94 | | Minus |
