UFO07684.5prime Sequence
1088 bp (1025 high quality bases) assembled on 2011-07-08
> UFO07684.5prime
CAGTCGACATGAATCGGGTTCAGGTCACGCCGCGGAGCTATCCCACGAAC
CTTATCGATAAGGACTGGGGAAATCGAAAGCTTTTTTATACGAAAGATTC
GGAGAACTTTCTTCGCTTAGTCCACGATATGAAGCTCAGGGATGACGATG
TCTGGATCGTAACTCTACCGAAATGCGGAACCACTTGGATGCAGGAACTG
CTCTGGTTGCTCCTCAACAACTGCGATTTCGAGGGGGCGTTGGCCAAGGA
TCAGGAGCTGCGAACTCCGTTTCTCGAGTTCGGTTACTCCGTTTTTCACG
ACCCGAACCGCTCATTCGGGCCTATCGAGGACCTGAAGTCCCCGCGACTG
ATAAAATCCCACCTTTCGCTTGCCCTCCTCCCATCAAAACTTTGGGAGGG
AAAAAACAAAGTGATCTATGTGTCCCGTAACCCCCTGGACTCCTATGTCT
CCCGATATTATCACGGAGTATCTTTTGGTTTCAATTACGGGAAGTCACTG
CACCAGTACTTCGATGAGGTGCTGGCCTCTGATGATTTCCCCACGGAGTT
CATTGAACACGCCCACGAGTTCTACCAACTGAGGAACGAGCCTTGGGTAT
TCTACACCAGCTTTGAAATGATGAAGAAAGATCTGCGAGGAGTGATCAAC
GATGTCTCCAGATTTCTGAATAAACCCATCAACGATCAGCAAATGGAGAA
ACTGCTAAAGCATTTGTCCTTCGCGGAAATGAAGAAAAATCCCACCACGA
ATCATCTGTGGGAGTTGGCCCAAGTTCAACACGAAAATGCTGGGAAAGAA
ATGCACCCATTCGTGAGACGTGGGGATGTCAATGGCTACAAGGACGAATT
GAAGCCCGAACAAATTGAGAAGGCCAATGTCCGGATACAAGAGGTTCTTG
CGAAGACGGTGTGACTTTGGACGACTACTGCTCCTGAAAGATCAGCAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATA
TCATATCATATCATTATCACACTAGCTAGAGATCCTGGTCATGACTAGTG
CTTGGAATCTTCACAATAAAAAAACGCCCGGCGGCAAC
UFO07684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-RC | 2062 | CG44167-RC | 21..959 | 9..945 | 4645 | 99.8 | Plus |
| St3-RB | 1101 | CG44167-RB | 21..959 | 9..945 | 4645 | 99.8 | Plus |
| St3-RA | 1121 | CG44167-RA | 21..958 | 9..944 | 4640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23683729..23684186 | 278..735 | 2290 | 100 | Plus |
| 2R | 25286936 | 2R | 23683397..23683667 | 9..279 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 23684374..23684512 | 809..945 | 595 | 98.6 | Plus |
| 2R | 25286936 | 2R | 23684248..23684320 | 736..808 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:07:00 has no hits.
UFO07684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:10 Download gff for
UFO07684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5431-RB | 9..955 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:00 Download gff for
UFO07684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RB | 13..959 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:50 Download gff for
UFO07684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RB | 13..959 | 1..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:50 Download gff for
UFO07684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23683389..23683665 | 1..277 | 98 | -> | Plus |
| 2R | 23683729..23684186 | 278..735 | 100 | -> | Plus |
| 2R | 23684248..23684320 | 736..808 | 100 | -> | Plus |
| 2R | 23684374..23684512 | 809..945 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:00 Download gff for
UFO07684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19570912..19571188 | 1..277 | 98 | -> | Plus |
| arm_2R | 19571252..19571709 | 278..735 | 100 | -> | Plus |
| arm_2R | 19571771..19571843 | 736..808 | 100 | -> | Plus |
| arm_2R | 19571897..19572035 | 809..945 | 98 | == | Plus |
