UFO07689.5prime Sequence
1177 bp (1058 high quality bases) assembled on 2011-07-08
> UFO07689.5prime
CAGTCGACATGTTAACGTTTTGGGAAAAGACATCAAAAAAATCAGCAGAT
ATACCAAACCAAATCAGCGGAGCACTTGCATCAAGTAACTTAGCTATCTG
CGCCTGTCTAATAGTAATCTTCATTGCATCTGTAACCACGGCCAAAACAC
CGGATCAGGAAGCTATCCATCACAAAAATGACGAATTTCCGGAAGAGGAA
AGCGACATGGTGATGGAGCCAAATGATTTTTCGCCAATCACTGTACTAAA
GTCACATGAACAACACTTTCATATGCCGCCCACAACGCATCTTCAGCCAC
AAGTTCAAGCTAGAATTCATCCTAGAGTTCAACCCAGAAAATTTCAATCC
GCACTCCAACAAAATGCTGAGGAGCCATTCCGGCCCATTGCTAATCCAAA
TACGAAGATTGTTGGCGATTCTCATACGCAGGCTGCCCAAAATTTCTACC
CACCTTTCTACCATGAGGCTCCTCCACTGGGCCATTCCAGACCTTACTTT
GGTCACGGCCCGCCTGTATCGGAAACAACTCCTTTATCCTTACCCCTTCC
GCTCTTGACAACTCAACAGCAACAGCCAGCAACTCAGCAGCGGACTTTCG
ATGCCAGTATACTTGGAAGTGGGGATTTTGGTGTCCTTAGAGGTGGAACC
TTCTATCCGGAGGAGGAAATGCCCTATCACCCCGAAGATAACAGTGATTA
CATCTATGGAGATGCTAACAATGGACACGGTCGACCATCTGAGGGTTTTG
TTCAAAAGTACACGTATCCAGAGGAGCAGTTCGCTAATTTTCGCGATTTT
GCCGATATCAACACGCCCGCCGATACGGCGTTTTCGCAATTTGTGGTGGT
GTATGCGGCCAAAATGCCTCTGTACCACACTCTCATCCGCATCCTAAAAC
ATATTTGAACAGTTAGAGCAGCTGGACAGGGAAAAAGAGCTGAAAAATAC
CGAATTTGAGAACAAAACTTCTTCGAAAATAAGTCGAAATTGTCTAATAC
AAGTGCAAAAAAAATACCGAAAAAACGCCCCAAGTCCAGATCCTCAGAAA
ATAGAGCTTTACTAGCTCTAGTGCAGCTTTCCTAGAACATCGTTTGGCGC
GGGGCCCAGGTATGGTCTATCTATCGTAACCTAATCTAATCAACTAGCCT
AGAGAAATCGGGTAGAACATATAGGGC
UFO07689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32816-RF | 1834 | CG32816-RF | 310..1383 | 9..1070 | 5060 | 98.7 | Plus |
| CG32816-RE | 1730 | CG32816-RE | 206..1279 | 9..1070 | 5060 | 98.7 | Plus |
| CG32816-RA | 1821 | CG32816-RA | 297..1370 | 9..1070 | 5060 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 317079..317929 | 1025..180 | 4025 | 99.3 | Minus |
| X | 23542271 | X | 333565..333736 | 180..9 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:07:17 has no hits.
UFO07689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:12 Download gff for
UFO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 295..1376 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:08 Download gff for
UFO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RB | 281..1362 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:58 Download gff for
UFO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 297..1378 | 9..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:58 Download gff for
UFO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 317019..317928 | 181..1077 | 98 | <- | Minus |
| X | 333565..333736 | 9..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:08 Download gff for
UFO07689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 211052..211961 | 181..1077 | 98 | <- | Minus |
| arm_X | 227598..227769 | 9..180 | 100 | | Minus |
