UFO07693.5prime Sequence
1119 bp (961 high quality bases) assembled on 2011-07-08
> UFO07693.5prime
CAGTCGACATGACAGCAATGAATGCGGATGAGACAAAGCTGGCTGGAATG
CCTCAAGGAGCTGAGGAGGAGCAGGAACCGGAGAGGGAGCAGAAGAAGGA
GAGCGATGGAGCAGCAGCTGCAGCAGGAGTACAGTGTGATCCTGATAGCA
GAATAGTGGCTCCGCCGCCCAGGCAGCGGACTCTGACAAGGACGGCCGAA
CTGGACGCGGACTGCGAGGACATCGAGTTAGATGCCGACGATGGTTTGGA
CGATGCGGCGGATAGCATCACCTTGGAGTTGGCCCTATCGCCGCACAGCA
GCGCCACGCCCACGCCCTCGCCCACCACCGCCGACGAGGATTTCGCCCAG
CTGGACAACAGCAAGCCCTTCAAGATCAAGGACATCACGAGGAACATCCG
CAAGGCAGTTGTGGCCACATTTTTGTCGGAGCTGCGGACGAAGGTGTCGC
TGAAATTTGAGCGGGCTCAGCCGGCGATACACCTGGATTGCGATGGCACC
GAGGTCGACGATGAGGAGTACTTCAGCACTCTGGAGCCAAATGCCGAATT
GATTGCCGTCTTTCCTGGCGAGCAGTGGCGCGATCCCAGTGACTACAATG
CCAATCTGCGTCGCACATCGCTGGATGCACAGCGTCTGCGGAGTCTGGTG
AGCAAACTGCAGCCGAACTATATGAACGATGATGATTTGGATAAGCTGTC
GAACATGGATCCCAAACTCCCTGGTGGATATCACGGGTCGGGAGCCCAAG
GACAACGAATACTCAGCCAGAAGCGATGCCGCACGGCTATCAACGGAATT
GTCTTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATTCATAATCATAATCATATTCATAATCACCAACTAGCCTA
GAGATCCTGGTCATGACTAGTGCTTGATTCTTCACCAATAAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAATCCAGAATGGAGGTTCTGAGGTCA
TTACTGAATCTATTCAACAGGAGTCAAGCGAGCTCGATTATCAATTACGC
CCCGGCCCTGCCCTCATTCGCAGTACCTGTTGTTAATTCATAACGCATTT
CTGGCCGAACCTGGAAGCC
UFO07693.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-3-RA | 1799 | CG8364-RA | 176..975 | 7..807 | 3920 | 99.4 | Plus |
| Drep-3-RB | 1558 | CG8364-RB | 181..980 | 7..807 | 3920 | 99.4 | Plus |
| CG44314-RC | 974 | CG44314-RC | 446..813 | 7..374 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12056019..12056386 | 7..374 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 12061821..12062042 | 585..807 | 1065 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12061502..12061717 | 369..584 | 1005 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:07:33 has no hits.
UFO07693.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:14 Download gff for
UFO07693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-3-RA | 173..980 | 1..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:14 Download gff for
UFO07693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-3-RB | 177..984 | 1..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:04 Download gff for
UFO07693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-3-RB | 177..984 | 1..812 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:04 Download gff for
UFO07693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12061508..12061717 | 375..584 | 98 | -> | Plus |
| 2R | 12061821..12062046 | 585..812 | 98 | == | Plus |
| 2R | 12056015..12056386 | 1..374 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:14 Download gff for
UFO07693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7943520..7943891 | 1..374 | 98 | -> | Plus |
| arm_2R | 7949013..7949222 | 375..584 | 98 | -> | Plus |
| arm_2R | 7949326..7949551 | 585..812 | 98 | == | Plus |
