UFO07704.5prime Sequence
1107 bp (1014 high quality bases) assembled on 2011-07-14
> UFO07704.5prime
CAGTCGACATGAGCCCCTTCGGCTCCAAGAAAAACCGATCCCTGTCGGTG
CGGGTGAGCACCTTCGACTCGGAGCTGGAGTTCAAGCTGGAGCCGCGCGC
CTCCGGCCAGGATCTGTTCGACCTGGTGTGCCGCACCATCGGGCTGCGCG
AGTCTTGGTACTTTGGGCTGCAGTACGTCGACACCCGCAGCAACGTGTCC
TGGCTGAAAATGGAGAAGCGGGTGCGCGACCAGCGCGTTGAGCTGCACGC
TAGCAATAATGTGTATGTGTTTAGCTTCTACGCCAAGTTCTTTCCGGAGA
ACGTCAGCGAGGAGCTGATCCAGGAGATCACGCAGCACCTGTTCTTCCTG
CAGGTCAAGCAGAGCATCCTCTCCATGGACATCTACTGCCGCCCGGAGGC
GTCCGTGCTGCTGGCCTCCTACGCGGTGCACGTGCAATACGGTCCGTACG
ACTACGAGACCTACAAGGACGGTATGCTGGCCGGGGGTGAGCTTCTGCCC
AAGGGAGTGACCGATCAGTACCAGATGACGCCCGAAATGTGGGAGGAACG
GATCAAGACATGGTACATGGACCATGAGCCCATGACGCGCGACGAGGTGG
AGATGGAGTACCTGAAGATTGCTCAGGACCTGGACATGTACGGAGTAAAC
TACTTTCCTATTACGAATAAGAACAAAACCAAATTGTGGCTGGGCGTCAC
CTCCGTGGGCCTAAACATCTACGATGAGCGCGATAAGCTAACGCCAAAGA
CAACGTTCCAGTGGAACGAGATACGGCACGTCAGCTTCGACGACAAGAAG
TTCACCATTCGCCTGGTGGATGCCAAGGTTTCGAATTTCATCTTTTACTC
GCAGGACCTCCACATCAACAAATGATTCTTGACCTGTGCAAGGCAATCAC
GATCTATATATGCGCCGCCGCAAACCCGACACCATGAAATCCAGCAGATG
ATGCCCAAGCCAAGAGAGAGCACGCCGCCAGATCGACGCAAAAGTCATCA
GGAAAAGAGCTGCGCGAAAGCGGGCACGAGCGCTACGAGCTGGAGAAGAG
CATGAAGCACTGCAACGAATGCCCATGACACGAGCACTTCGCTTCCGAAG
GAACAAG
UFO07704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mer-RB | 3400 | CG14228-RB | 358..1474 | 9..1100 | 4930 | 97.4 | Plus |
| Mer-RA | 2503 | CG14228-RA | 358..1474 | 9..1100 | 4930 | 97.4 | Plus |
| Moe-RL | 2528 | CG10701-RL | 701..856 | 269..424 | 180 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19692301..19692957 | 665..9 | 3285 | 100 | Minus |
| X | 23542271 | X | 19692035..19692242 | 872..665 | 1040 | 100 | Minus |
| X | 23542271 | X | 19691734..19691935 | 1060..874 | 335 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:54 has no hits.
UFO07704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:08 Download gff for
UFO07704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mer-RA | 348..1439 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:17 Download gff for
UFO07704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mer-RA | 350..1441 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:58 Download gff for
UFO07704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mer-RA | 350..1441 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:58 Download gff for
UFO07704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19692032..19692241 | 666..874 | 99 | <- | Minus |
| X | 19692301..19692961 | 1..665 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:17 Download gff for
UFO07704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19586065..19586274 | 666..874 | 99 | <- | Minus |
| arm_X | 19586334..19586994 | 1..665 | 99 | | Minus |
