UFO07705.5prime Sequence
1126 bp (1033 high quality bases) assembled on 2011-07-14
> UFO07705.5prime
CAGTCGACATGCGAAGAAACCTGCGCTTAGACTGGAGGGCCCTGGCGCTG
CTGGGCGCCCTCCTCTCGTTCATCATCGCCTGGCGGGGCCTTGTATCTGC
GATGCCCCTCATGGCCATGGACAACAACTTGACAGACTCATCCGGATCCA
CAAACACATCCACATCCTCCACATCAAAATACAACAGCACGAACAATAGT
AATCTGTTTAGTAATAGTTATCTACAAAGTGATCATAGTCGTAGTAGTTT
AGTGCCGAGCGCAGTGAGTGAACGTAGTGTAAATCAACCCACAAATCAAA
GTATTAATGCTGAATTTAATCAGAGCTTAAGCACGCATCCAACTGCCATA
ACAAGCACACCACAAACCCAAACTCAAACCCAAATCCAATCCCAATACCC
ATCGCAGGCGGAGGATTCCGATCAGCTGGAGGAGCCGCTGGGATTCGTCA
TCTCAGCGATGCCGAACGAGCATCTGGCGGTCCTGTCGCGTACCGAACGC
AGCATTCGTCACCAGAATCAGCAGCAGCAGAAGAAGCATCACCATCATCA
CCAACAACAGCAACAGCAACAGCATCAGCAGCAGCAACCAATGTCGCCCG
CTGACAATAATTTCATTGGTTCGAAATCGAAAAGACTGAGCAACCCTAGA
AGTAGTCTTAACATAAATAGCAGTAGCAGTAACACGCCCATCAGCAATCT
GGACCGTAACGAACGATCCACGGTGCCACAGTCCCATTTGGCCTGGACCT
CGCGCAAGATCCAGCTGTACATCAAAAATCGCATCCTTCAGATATTGCGG
GATGGCGTTGTCAACGGAACCCAGGACGAGAATAGTGAATTCACAATTCT
CCAGCGATCCACGGTGGATGTGGGACGCATCAAGTTGCAGAGTGTGGCCA
CTTGCCTGTATCTCTGCATGGACGCGTGCGTGTTCCCTACGGCTCGAAGA
CTTCACGACGACTGCGTCTCAACGAGAACATGGGTCTCAGAACTACACAC
TTACTCCTCCACGTACCACTCTCAAGCGCGGCGGTCTTTCTACTGGCCCT
GAATGGCAGTGCAGCCGCGTACCCAGATCCTCCAGCGGATCGCTGGCAGC
TGAACACCTCCGAACGCATACGGAAC
UFO07705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnl-RD | 4073 | CG4608-RD | 1111..2227 | 9..1109 | 5120 | 98 | Plus |
| bnl-RC | 4295 | CG4608-RC | 1111..2227 | 9..1109 | 5120 | 98 | Plus |
| bnl-RA | 3632 | CG4608-RA | 1111..2227 | 9..1109 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19827654..19828488 | 843..9 | 4175 | 100 | Minus |
| 3R | 32079331 | 3R | 19800398..19800501 | 946..844 | 470 | 99 | Minus |
| 3R | 32079331 | 3R | 19797412..19797521 | 1061..956 | 290 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:58 has no hits.
UFO07705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:09 Download gff for
UFO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RC | 1111..2212 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:20 Download gff for
UFO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RA | 1111..2212 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:00 Download gff for
UFO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RA | 1111..2212 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:00 Download gff for
UFO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19800398..19800501 | 844..946 | 99 | <- | Minus |
| 3R | 19827654..19828488 | 9..843 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:20 Download gff for
UFO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15626120..15626223 | 844..946 | 99 | <- | Minus |
| arm_3R | 15653376..15654210 | 9..843 | 100 | | Minus |
