UFO07708.5prime Sequence
1140 bp (1028 high quality bases) assembled on 2011-07-14
> UFO07708.5prime
CAGTCGACATGTTTATAGCTCACCTGCCTATCACATTTACTCTCGCCATC
CTGCTCGCAATTGCTTCTAATGAAGGCCCGCAAGGCGTAGAAAGTGCGAC
AAGGACGGCAATTGAAGCTATACGAACAGGAATCGGCACGAAACCGGAAA
CGGAAATTGCGGACGCCACAGAGGCGGAAGCCCCCGTGCGAGAGGTAATA
TCGCTGCTGGGCATAATCGATGGTGCTGAGTCCGATATCCTGGTTCCCGA
CGCCGACGACAAGTGTCCTGGCGGCTATTTCCACTGCAATACAACGGCAC
AGTGTGTTCCACAGCGGGCCAACTGTGACGGCAGTGTCGACTGCGATGAC
GCATCGGATGAGGTGAACTGCGTGAACGAGGTGGACGCCAAGTACTGGGA
TCACCTGTACAGAAAGCAGCCATTCGGGAGACACGATAATCTCAGGATTG
GCGAATGCCTTTGGCCCAACGAAAACTTTTCCTGTCCCTGTCGAGGTGAT
GAAATTCTATGCAGATTTCAGCAGCTAACCGATATTCCAGAACGACTGCC
GCAGCACGATCTGGCAACGCTCGATCTAACGGGAAACAATTTCGAAACCA
TCCACGAAACTTTCTTCAGTGAACTGCCAGACGTCGATAGCTTAGTGCTG
AAGTTCTGCTCAATCCGTGAGATTGCCTCGCATGCATTCGATCGCCTGGC
GGACAACCCACTGAGGACCCTTTATATGGACGATAATAAATTACCGCATC
TGCCGGAACACTTCTTCCCCGAGGGCAATCAATTGAGTATTCTCATTTTG
GCACGCAACCACCTGCACCATTTGAAACGAAGCGATTTTCTCAATCTACA
GAAGTTACAGGAACTGGACCTTCGCGGCAATCGCATAGGAAACTTCGAAG
CCGAGTCTTTGCCCGACTACCGAATTTGGAGTGCTCTATCTCAATGAAAA
CCACTTAAAGCGTCTGGATCCAGATAGATTTCCCAGACCCTGCTCAATCT
GCACACTTTGTCTGACTACATCAGATCGAGGACATCGCCGCGAATACATC
CCTTTCACGCCTTCGATTACTAATTTCTGCCTGCCATCGATATCCACATA
CGAAATGAACATTGCATCTAACAATCTCACAAGAATTAAC
UFO07708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34411-RB | 2975 | CG34411-RB | 351..1463 | 9..1109 | 5135 | 98.1 | Plus |
| CG34411-RC | 2870 | CG34411-RC | 256..1358 | 19..1109 | 5100 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13172741..13173187 | 459..13 | 2205 | 99.6 | Minus |
| X | 23542271 | X | 13172507..13172618 | 571..460 | 560 | 100 | Minus |
| X | 23542271 | X | 13170258..13170335 | 721..644 | 390 | 100 | Minus |
| X | 23542271 | X | 13167386..13167504 | 1049..936 | 370 | 93.3 | Minus |
| X | 23542271 | X | 13167721..13167793 | 866..794 | 365 | 100 | Minus |
| X | 23542271 | X | 13170020..13170091 | 793..722 | 360 | 100 | Minus |
| X | 23542271 | X | 13172313..13172384 | 643..572 | 360 | 100 | Minus |
| X | 23542271 | X | 13167584..13167650 | 931..866 | 285 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 3879..3951 | 1044..1116 | 113 | 61.6 | Plus |
UFO07708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:10 Download gff for
UFO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1443 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:23 Download gff for
UFO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1443 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:06 Download gff for
UFO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1443 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:06 Download gff for
UFO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13167579..13167650 | 866..935 | 97 | <- | Minus |
| X | 13167722..13167793 | 794..865 | 100 | <- | Minus |
| X | 13170020..13170091 | 722..793 | 100 | <- | Minus |
| X | 13170258..13170335 | 644..721 | 100 | <- | Minus |
| X | 13172313..13172384 | 572..643 | 100 | <- | Minus |
| X | 13172507..13172618 | 460..571 | 100 | <- | Minus |
| X | 13172741..13173190 | 8..459 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:23 Download gff for
UFO07708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13064291..13064368 | 644..721 | 100 | <- | Minus |
| arm_X | 13066346..13066417 | 572..643 | 100 | <- | Minus |
| arm_X | 13066540..13066651 | 460..571 | 100 | <- | Minus |
| arm_X | 13061612..13061683 | 866..935 | 97 | <- | Minus |
| arm_X | 13061755..13061826 | 794..865 | 100 | <- | Minus |
| arm_X | 13064053..13064124 | 722..793 | 100 | <- | Minus |
| arm_X | 13066774..13067223 | 8..459 | 98 | | Minus |
