UFO07710.5prime Sequence
1135 bp (1022 high quality bases) assembled on 2011-07-14
> UFO07710.5prime
CAGTCGACATGGAACTCCTCAACGAATCTGCTCCGAATCCGCTTGCCAAG
ACGCCGAAAAGTGGCATGTCCACGGGCGGCAAGATCCTGATAGCAGCAAC
GGGCGGAGTAGGTATCGGTCTGTCGATTGTGTGCGCCTCCTTTGTGGCGC
CTGCATTCCGGAGGATTTGCTTGCCTTATGTGCCAGCGACGACCGAGCAA
ATACAGAACGTTCTCAGCTTCCTGCCCAAGAATTCGGCCGGAAAACTGCT
GGACATTGGATCCGGCGACGGACGGATTGTAGTGGCTGCGGCACAGCATT
GTGGTGCTCTAAAAGCAGATGGCGTGGAGCTAAACCCATGGCTGGTCTAC
TACTCGCGCCTGGCCGCGCTGCGTCACAGCGTTTCCAAACGGACGAGATT
TTTTCGGCGAGATCTCTGGAAGTTCGATATAAAGGACTACAACTTCGTGG
TCATTTTTGGGGTTGAGCAGATGATGCAAGATCTAGAACACAAACTCATT
GCTGAGTGTCCGCACAACACCAAGATTATCGCCTGCCGCTTTCCACTACC
CAGCCTAGAGCACGTGAAGATTATAGAGGACGGAGTAAACACCGTCTGGT
TCTACGACCTGAACAAAAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCGACATGAAAGCCATCACAAACGGCATGATGAACCTGATCG
CCAGCGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGCGAGAGTGTCATATTGCCACGTTTAGATCAGAACTGTGAAAC
CTCACCAGGAATGCTGAAACGAAACCTATCTCATAATCCTTTAGGATGCA
GTTCCGATACCGCCATCTTGCAATATATGTATAAA
UFO07710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3337-RB | 2819 | CG3337-RB | 52..663 | 9..620 | 3060 | 100 | Plus |
| CG3337-RA | 708 | CG3337-RA | 52..663 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21222860..21223195 | 620..285 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 21223257..21223533 | 285..9 | 1385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:11 has no hits.
UFO07710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:11 Download gff for
UFO07710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3337-RA | 44..669 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:25 Download gff for
UFO07710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3337-RA | 44..669 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:08 Download gff for
UFO07710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3337-RA | 44..669 | 1..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:08 Download gff for
UFO07710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21222854..21223194 | 286..624 | 99 | <- | Minus |
| 3R | 21223257..21223539 | 1..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:25 Download gff for
UFO07710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17048576..17048916 | 286..624 | 99 | <- | Minus |
| arm_3R | 17048979..17049261 | 1..285 | 98 | | Minus |
