UFO07712.5prime Sequence
1104 bp (1006 high quality bases) assembled on 2011-07-14
> UFO07712.5prime
CAGTCGACATGGCAGCCAGTAAGTCCCAGATCGAGGAGCTGTACGACTTT
ATCTATCCGCTCGCAGTGAGAGCTGGGGAAATCCTGTTGGAAGGCTATCA
AAATGCTGGCAAGGCGGTGGCCCTCAAGGACGGGGAGTTCTATAATGTAG
TCACTGCCTATGATAACCAGATAGAGGAGTTTCTCGTGGAGAAAATACTG
GCGCGCTACCCGGATCACAAATTCATTGGGGAAGAGGATACCCACAAGAA
TGACAATGTAACGAAAGAGCTGACGGATGCTCCAACTTGGATCATAGATC
CCATCGATGGAACCTCGAACTTTATCAAACAAATTCCACATGTCTCGGTT
TCAATTGGATTGTCCATTAAGAAACAGATCGTGCTGGGTGTAGTTAACAA
TCCCGCACAGAATAAGTTATATACCGCGAAATTGGGCCAGGGTGCCTTTT
GCAATGGGAAACCAATTCAGGTGAGCAGCTGTGAACATCTCAACGATGCT
AATGTGGCATACGAGGTTTGCTTGCTGCACGCTCCAAAGATCCGGAACAA
GCACATCAAAAGAATCTACCATGTGGGATCCAATGCCAGAAGACTCCTGG
CATATTCCGCTGTAGTGGATTCCCTTTGCATGGTGGCCGCAGGCAACTTG
GATGCCTTTCATATTGAAGACATGTATCCCTGGGATTGTGCAGCTGGCTA
TTTGCTCATCCGTGAGGCCGGCGGAGTTGTCACGCATCCCTACGGCGGAC
CCTTCGATATCATGAAGCCAGATCTAATCTGCGCCGGAACGGAGACACTG
AGAGCTGAGATAGAGCATCTTATTCGGAAAGGCTGATCAGGAGAAGCATG
TGGGAGGAGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGTCATAATCATAATCATATCATAATCATATCACACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCATAAAAAACGCCCGG
CGCACCGAGCGTTCTGAACAATCGGATGAGTCTGAGTCATACTGGGAATC
TATCACAGGAGTTCAAGCGAGCTCGAAATTTCAAAAATTAGGCCCCCGCG
CCCC
UFO07712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17026-RA | 1004 | CG17026-RA | 91..942 | 9..861 | 4240 | 99.9 | Plus |
| CG17027-RB | 1558 | CG17027-RB | 412..1057 | 150..795 | 1085 | 78.2 | Plus |
| CG17027-RA | 1362 | CG17027-RA | 216..861 | 150..795 | 1085 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15975458..15976041 | 9..592 | 2920 | 100 | Plus |
| 3L | 28110227 | 3L | 15976097..15976366 | 591..861 | 1305 | 99.6 | Plus |
| 3L | 28110227 | 3L | 15980511..15980951 | 150..590 | 735 | 77.8 | Plus |
| 3L | 28110227 | 3L | 15981203..15981387 | 611..795 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:21:19 has no hits.
UFO07712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:12 Download gff for
UFO07712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 70..936 | 1..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:30 Download gff for
UFO07712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 84..950 | 1..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:11 Download gff for
UFO07712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 84..950 | 1..870 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:11 Download gff for
UFO07712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15976099..15976374 | 593..870 | 98 | == | Plus |
| 3L | 15975451..15976041 | 1..592 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:30 Download gff for
UFO07712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15968551..15969141 | 1..592 | 99 | -> | Plus |
| arm_3L | 15969199..15969474 | 593..870 | 98 | == | Plus |
