UFO07714.5prime Sequence
1109 bp (1004 high quality bases) assembled on 2011-07-14
> UFO07714.5prime
CAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCGCCATGGCG
CTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCGGAATACCA
GGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTTCATGCGCG
ACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGTTGGAGGCG
CGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAACGGCAAACT
TGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGACTTCCGCG
AGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCGAACTGGTC
ACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATTCTCGAGAA
GAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGAACTGGTGG
CCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACCCGAATGCC
TCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATCGGAACGCG
ATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGGCGTGGACG
TTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGGTGGAGATG
ATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATTGGTGGCAA
TGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGGCGTCGATG
GACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCCAGGAGGTG
ATGGCCTGCGGATGTCCTCAGGCCACTGCTGTCTACCAGTGTCCACGTAC
GCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAGGCATCCAGTCCAT
TGGACACATTGTGAATGCTATTGCATTGGGGAGCCAGCGCTGTAATGATG
GGCTCCCTGCTGGCGGGCACATCGGAGGCACCGGGGCGAGTACTTCTTCT
CGACGGATGCGCCTTAAAAGTACCGCGCATGGCTCCTGGAGGCATGGGAG
GCGGCGAATGCAAAGGGCCTGCCATGTCGCGCTTCTTAACACGAAATGAA
TAAAAGAAG
UFO07714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ras-RD | 2810 | CG1799-RD | 575..1656 | 8..1083 | 5050 | 98.5 | Plus |
| ras-RE | 2415 | CG1799-RE | 471..1552 | 8..1083 | 5050 | 98.5 | Plus |
| ras-RA | 2519 | CG1799-RA | 575..1656 | 8..1083 | 5050 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10746420..10747072 | 50..702 | 3265 | 100 | Plus |
| X | 23542271 | X | 10747485..10747783 | 702..1001 | 1340 | 98.7 | Plus |
| X | 23542271 | X | 10746184..10746226 | 8..50 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:31 has no hits.
UFO07714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:24 Download gff for
UFO07714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RB | 543..1643 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:11 Download gff for
UFO07714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RC | 368..1468 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:47 Download gff for
UFO07714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RA | 566..1666 | 1..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:47 Download gff for
UFO07714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10746175..10746226 | 1..50 | 92 | -> | Plus |
| X | 10746421..10747072 | 51..702 | 100 | -> | Plus |
| X | 10747486..10747882 | 703..1095 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:11 Download gff for
UFO07714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10640208..10640259 | 1..50 | 92 | -> | Plus |
| arm_X | 10640454..10641105 | 51..702 | 100 | -> | Plus |
| arm_X | 10641519..10641915 | 703..1095 | 95 | | Plus |
