UFO07716.5prime Sequence
1105 bp (1013 high quality bases) assembled on 2011-07-14
> UFO07716.5prime
CAGTCGACATGGCTGCCCCAGCAGCCTGTACGCGTTTTTCGGACAATTAC
GACATCAAAGAAGAGTTGGGAAAAGGAGCATTCTCAATTGTGAAAAGATG
TGTCCAAAAGTCAACTGGCTTTGAATTTGCTGCAAAAATTATCAATACAA
AAAAATTAACTGCCAGAGACTTTCAAAAACTGGAACGTGAAGCAAGGATC
TGCAGAAAGTTACACCATCCCAACATAGTGCGGCTACATGACAGTATACA
GGAGGAGAACTATCACTACCTTGTTTTTGACCTTGTAACCGGTGGTGAAC
TTTTTGAAGATATCGTTGCACGCGAATTTTATTCAGAAGCTGATGCATCA
CATTGTATTCAACAAATATTGGAATCGGTCAATCACTGCCACCAAAATGG
TGTGGTGCACCGAGATCTGAAACCAGAGAATTTACTATTAGCTAGTAAGG
CTAAGGGTGCAGCAGTGAAACTCGCTGACTTTGGTCTAGCCATTGAAGTT
CAAGGCGATCATCAGGCTTGGTTTGGATTTGCCGGCACACCAGGATATCT
GTCTCCTGAGGTATTGAAAAAGGAGCCCTATGGGAAATCGGTAGACATAT
GGGCATGTGGAGTTATTCTTTACATACTTCTTGTCGGTTATCCACCCTTT
TGGGATGAAGATCAGCACCGACTGTACTCGCAGATAAAAGCGGGAGCTTA
TGATTATCCGTCTCCAGAATGGGATACGGTTACTCCAGAAGCTAAAAATC
TTATTAATCAAATGCTAACCGTTAATCCAAATAAACGAATAACTGCAGCT
GAGGCTTTAAAACATCCGTGGATTTGTCACGCGAACGTGTGGCTTCCGTT
GTGCATCGCCAAGAAACCGTAGACTGTCTCAGAAATTTATGCGCGGCGCA
AGCTAAAGGGAGCCATACTTACGACATGTTGCGACCAGAAATTTTCGAGC
AGAGTATGATACTAAAAAGGTGAGATCAAGGTCAAGATCACGATTCATCT
AGCACTACCTCTGAGACGATGACTAAAAGCAGCTAGACGACAGATATAGA
TCTGACAGTGATGGAGCATTAACATTGGCGACTTGATGATACCAAATGGT
ATCCG
UFO07716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaMKII-RH | 2371 | CG18069-RH | 776..1827 | 9..1042 | 4770 | 98 | Plus |
| CaMKII-RC | 3759 | CG18069-RC | 297..1348 | 9..1042 | 4770 | 98 | Plus |
| CaMKII-RA | 3589 | CG18069-RA | 127..1178 | 9..1042 | 4770 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1047822..1048148 | 610..284 | 1635 | 100 | Minus |
| 4 | 1348131 | 4 | 1047453..1047575 | 827..705 | 615 | 100 | Minus |
| 4 | 1348131 | 4 | 1047635..1047730 | 704..609 | 480 | 100 | Minus |
| 4 | 1348131 | 4 | 1050298..1050392 | 168..74 | 475 | 100 | Minus |
| 4 | 1348131 | 4 | 1047268..1047388 | 945..829 | 405 | 96.7 | Minus |
| 4 | 1348131 | 4 | 1049187..1049248 | 228..167 | 310 | 100 | Minus |
| 4 | 1348131 | 4 | 1050455..1050519 | 73..9 | 310 | 98.5 | Minus |
| 4 | 1348131 | 4 | 1048504..1048560 | 283..227 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:22:40 has no hits.
UFO07716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:25 Download gff for
UFO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaMKII-RD | 290..1338 | 1..1032 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:16 Download gff for
UFO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaMKII-RA | 120..1187 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:51 Download gff for
UFO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaMKII-RA | 120..1187 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:51 Download gff for
UFO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1047453..1047575 | 705..827 | 100 | <- | Minus |
| 4 | 1047635..1047729 | 610..704 | 100 | <- | Minus |
| 4 | 1047823..1048148 | 284..609 | 100 | <- | Minus |
| 4 | 1048504..1048558 | 229..283 | 100 | <- | Minus |
| 4 | 1049187..1049246 | 169..228 | 100 | <- | Minus |
| 4 | 1050298..1050392 | 74..168 | 100 | <- | Minus |
| 4 | 1050455..1050526 | 1..73 | 94 | | Minus |
| 4 | 1047264..1047390 | 828..948 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:16 Download gff for
UFO07716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1067890..1068016 | 828..948 | 95 | <- | Minus |
| arm_4 | 1068079..1068201 | 705..827 | 100 | <- | Minus |
| arm_4 | 1068261..1068355 | 610..704 | 100 | <- | Minus |
| arm_4 | 1068449..1068774 | 284..609 | 100 | <- | Minus |
| arm_4 | 1069130..1069184 | 229..283 | 100 | <- | Minus |
| arm_4 | 1069813..1069872 | 169..228 | 100 | <- | Minus |
| arm_4 | 1070924..1071018 | 74..168 | 100 | <- | Minus |
| arm_4 | 1071081..1071152 | 1..73 | 94 | | Minus |
