UFO07718.5prime Sequence
1147 bp (1029 high quality bases) assembled on 2011-07-14
> UFO07718.5prime
CAGTCGACATGCAGTCCCCCAACCAAACACAAGCCCATCTCCAGCAGCAG
CACCATCAGCAGCAGCAGCAACAACATCAGCAACACCAGCAGCAGCAACT
GCAGCAGCAGCAGCAGCAACATCACCACAATCAACACCAGCACCACAACT
CCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCACTCGAGCTCCTCG
GCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGCGGTCAATGGACA
CAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGGAGCAGCCACAGTG
GCGGCGGGGGCGGTGGTACTCTGCCAGCCTTCCAGCGGATCGCATACCCC
AACAGTGGCTCCGTGGAACGTTACGCTCCGATAACCAATTATCGCGGTCA
GAACGATACCTGGTTCGATCCGTTAAGCTACGCCACCTCCTCTTCCGGGC
AGGCGCAGTTGGGCGTCGGTGTTGGAGCCGGAGTGGTCTCGAATGTGATA
CGGAATGGGCGGGCCATTTCGGCTGCTAATGCAGCAGCTGCAGCCGCCGC
GGATGGAACCACTGGACGCGTAGATCCTGGAACCTTTCTCTCCGCCTCGG
CATCGTTGTCAGCAATGGCCGCTGAATCAGGCGGGGATTTCTATAAACCC
AACTCATTTAATGTGGGCGGCGGTGGCCGTAGTAAGGCTAACACGAGTGG
TGCCGCCAGCTCCTACTCCTGTCCAGGCTCGAATGCAACCTCGGCGGCGA
CTTCGGCGGTGGCGTCGGGAACGGCAGCAACTGCAGCGACGACGCTCGAC
GAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGCCTCAAAGCGAGC
CGGACTTTCCTGCTCCAACTGCCACACCACCCACACTTCGTTGTGGCGCC
GCAATCCCGCCGGAGAGCCCGTCTGCAATGCATGCGGCCTGTACTATAGC
TCCACAGTGTCCCACGGCCACTGACCATGAAAAAGGACACCATTCAGAAC
CGCAGCGGCAGCCGAAAGGGACGGAAGAGCGGAGTCAAGTCAAGTCAAGA
ACGCTTGGATGCCACTCATGAAATGGTCATTGGGTGACCATTGCCATACG
TGTGGGTGTGCCCTGGACAGACAGCGAATGAGTTCCATGACAAATTG
UFO07718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RG | 3377 | CG3992-RG | 1022..2143 | 8..1120 | 5070 | 97.8 | Plus |
| srp-RF | 3274 | CG3992-RF | 455..1576 | 8..1120 | 5070 | 97.8 | Plus |
| srp-RD | 3841 | CG3992-RD | 1022..2143 | 8..1120 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15999380..15999773 | 8..401 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 616..833 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 399..615 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 16001751..16001916 | 833..997 | 780 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:44 has no hits.
UFO07718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:26 Download gff for
UFO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 965..1990 | 1..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:18 Download gff for
UFO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 1014..2039 | 1..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:54 Download gff for
UFO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 1014..2039 | 1..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:54 Download gff for
UFO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16001752..16001916 | 834..997 | 99 | == | Plus |
| 3R | 15999372..15999773 | 1..401 | 99 | -> | Plus |
| 3R | 15999846..16000059 | 402..615 | 100 | -> | Plus |
| 3R | 16001189..16001406 | 616..833 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:18 Download gff for
UFO07718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11825094..11825495 | 1..401 | 99 | -> | Plus |
| arm_3R | 11825568..11825781 | 402..615 | 100 | -> | Plus |
| arm_3R | 11826911..11827128 | 616..833 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 834..997 | 99 | == | Plus |
