UFO07720.5prime Sequence
1049 bp (1012 high quality bases) assembled on 2011-07-14
> UFO07720.5prime
CAGTCGACATGTCGGAAACATACGATTACCTGTTCAAGTTCCTGATAATT
GGCAGTGCTGGCAGCGGTAAGAGTTGTCTGTTGCATCACTTCATCGAGAG
CAAGTTCAAAGACGACAGTTCGCACACCATCGGAGTGGAGTTCGGCTCGC
GGATTGTGAACGTGGGCGGCAAGTCGGTAAAGCTACAGATATGGGACACA
GCCGGTCAGGAGAGATTCCGATCGGTGACAAGATCGTACTATCGCGGAGC
AGCCGGAGCTCTCCTGGTCTACGATGCCACTTCGCGGGACTCTTTCAATG
CTTTGACAAACTGGCTGAATGATGCTCGCACTCTGGCCAGCCCAAATATT
GTGATCCTTTTGGTGGGCAATAAAAAGGACTTGGAGGAGGCGCGTGATGT
GACCTTTCTGGAAGCAAGCACCTTTGCCCAAGAGAACGAGCTTATCTTCC
TGGAGACGAGCGCCAAGACGGGGGAGAATGTTGAAGAGGCCTTTCTCAAG
TGCTCAAAGACCATACTGGCCAAAATTGAGACCGGAGAGCTGGATCCCGA
GCGCATCGGCAGCGGTATTCAGTACGGCGGAGCTGCTCTCCGTAACTTAC
AGACACGACAGCGCAGCATCAATAAGCCGGATTGCACCTGTCGCGTTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGAATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCGCCCTGCCACT
CATCGCAGTACTGTTGTATTTCTTTAAGCATCTGCCGACTTGAAGCCTTC
ACAACGGCATGATGAACCTGATCGCCAGCGCATCAGCACTTGTCGCCTTG
CTATAATATTTTGCCCATGGTGAAACGGGGGCCAAAAAGTGTCCATATT
UFO07720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab4-RA | 1316 | CG4921-RA | 238..876 | 9..647 | 3195 | 100 | Plus |
| Rab4-RB | 973 | CG4921-RB | 139..777 | 9..647 | 3195 | 100 | Plus |
| Rab14-RD | 878 | CG4212-RD | 192..344 | 123..275 | 240 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17573935..17574267 | 106..438 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 17574330..17574539 | 438..647 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 17573783..17573864 | 24..105 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 14357537..14357689 | 123..275 | 240 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:53 has no hits.
UFO07720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:27 Download gff for
UFO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RC | 529..1171 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:26 Download gff for
UFO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RB | 139..781 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:57 Download gff for
UFO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RB | 139..781 | 9..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:57 Download gff for
UFO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17573935..17574267 | 106..438 | 100 | -> | Plus |
| 2R | 17574331..17574543 | 439..652 | 99 | == | Plus |
| 2R | 17573699..17573714 | 9..24 | 100 | -> | Plus |
| 2R | 17573784..17573864 | 25..105 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:26 Download gff for
UFO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13461204..13461219 | 9..24 | 100 | -> | Plus |
| arm_2R | 13461289..13461369 | 25..105 | 100 | -> | Plus |
| arm_2R | 13461440..13461772 | 106..438 | 100 | -> | Plus |
| arm_2R | 13461836..13462048 | 439..652 | 99 | == | Plus |
