UFO07723.5prime Sequence
1105 bp (1038 high quality bases) assembled on 2011-07-14
> UFO07723.5prime
CAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAATCTGTTCAA
AAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTGGGCAAAGT
CGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAACTTCAATC
GCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATAACTACATA
AGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATGGATTCCGT
TTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCTGCAAGCAC
AAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACAAATTGGGG
GATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTTCCCGAAAT
GAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTACGATGGCC
AACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGCGCAAAGAT
GATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCTAGACGCAC
CTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGCCTTGTATG
ACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCTTCGCCACA
GAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAACTGGAGGC
AATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAATACGCTAC
GCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGCAGTCGCCA
GTGAATAAGTTAAACAATGCCAACATCAACAGCAACTATCAGAATCAAAT
AACTACAAACGGTGGCTCCAGTTTGGCAAACAGCCCGACATCTACCAGCT
CGTCGCTGCAAGAGCCTCGATTTGATTCAGTTTCTTCACACCAGAACCAC
GCCCAGAATCCCCAGCAGCAGCACTAGTATCAGCCACGCCCAGCAGTCCC
GTCGAAGAATGGGGGTGACCACCAATCATTGGAGCGTCCGAGCCTCGTGA
CTGATGCGATGCAGGCAACCACAACCACGGCGACTCGCCCACGAGGATTA
TGCCC
UFO07723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amph-RA | 3184 | CG8604-RA | 397..1494 | 9..1098 | 5105 | 98.4 | Plus |
| Amph-RC | 2497 | CG8604-RC | 397..1273 | 9..885 | 4385 | 100 | Plus |
| Amph-RB | 2884 | CG8604-RB | 397..1273 | 9..885 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12607123..12607314 | 213..404 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 12607544..12607714 | 510..680 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 12606913..12607050 | 76..213 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 12608051..12608178 | 758..885 | 625 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12609169..12609322 | 886..1039 | 565 | 96.8 | Plus |
| 2R | 25286936 | 2R | 12607376..12607486 | 403..513 | 540 | 99.1 | Plus |
| 2R | 25286936 | 2R | 12607914..12607998 | 679..763 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 12594000..12594068 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:21:27 has no hits.
UFO07723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:14 Download gff for
UFO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 411..1515 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:34 Download gff for
UFO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 390..1494 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:15 Download gff for
UFO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 390..1494 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:15 Download gff for
UFO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12608056..12608178 | 763..885 | 100 | -> | Plus |
| 2R | 12609169..12609389 | 886..1098 | 91 | | Plus |
| 2R | 12593993..12594068 | 1..77 | 94 | -> | Plus |
| 2R | 12606915..12607050 | 78..213 | 100 | -> | Plus |
| 2R | 12607124..12607314 | 214..404 | 100 | -> | Plus |
| 2R | 12607378..12607482 | 405..509 | 100 | -> | Plus |
| 2R | 12607544..12607714 | 510..680 | 100 | -> | Plus |
| 2R | 12607916..12607997 | 681..762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:34 Download gff for
UFO07723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8495421..8495502 | 681..762 | 100 | -> | Plus |
| arm_2R | 8495561..8495683 | 763..885 | 100 | -> | Plus |
| arm_2R | 8481498..8481573 | 1..77 | 94 | -> | Plus |
| arm_2R | 8494420..8494555 | 78..213 | 100 | -> | Plus |
| arm_2R | 8494629..8494819 | 214..404 | 100 | -> | Plus |
| arm_2R | 8494883..8494987 | 405..509 | 100 | -> | Plus |
| arm_2R | 8495049..8495219 | 510..680 | 100 | -> | Plus |
| arm_2R | 8496674..8496894 | 886..1098 | 91 | | Plus |
