UFO07724.5prime Sequence
1097 bp (998 high quality bases) assembled on 2011-07-14
> UFO07724.5prime
CAGTCGACATGTCCAGCGAGGAAGACAAACCGCCGGCGCCGCCTGTGCGT
CTCACCAGCAACCGGGGCGGCAATGAACGATCGGGAGGAGGAGTGGGCGT
CGGTGGCGGAGGACTGGGAGGTGGCGGTATGGGAGATGTACCGCCCGACA
TGCGTCCGCTGCCCAAGGAACCCGACGACTCCGATCGGAAGAAGAAAACG
CTGAAGAGCAAGATCAAAGGATCGAAGCCCTCGCACACGGACTCCAAGCC
GAACATCTCCTATCCCACGAACTTTGAGCACACGGTCCATGTGGGATTCG
ATGCTGTCACCGGCGAGTTTACCGGCATGCCGGAGGCATGGGCGCGACTC
CTGATGAACTCCAACATCAGCAAGCAGGAGCAGAAGAAGAATCCCCAGGC
CGTGCTGGATGTGCTCAAGTGGTTCGACAACACTACCAAACAGAGGCCAA
GTTCCAAGTACATGACAAATGCCATTACGACGCATTCAGGTTCATCGCTC
AGCCGCGTCAGCAGCAGCAGTCCGAGCAGCACGCCAACAGACTCGGAGCT
GCACGGCTCCAACAGCGGAGGTAACCTGATTGGCGTCCAGTTGGGCAGTA
TGACTCTGGGTCCCAACGCCAACAACGTGGCCGTTGCTGGGCAAATTCTG
GGCAACCACTACCAACAGCAGCAGCAGCACCTCCTTCAGCAGCAGCAGCC
ACTTTTGCATCAGAACCACAACCAGCATCACATGGGCATAAGTCAATCGC
ACTCGTACAACTTTGTCGGACACACGGTCTCCTCATCCACATCGCAACAT
TCATCCGCTAACGAGGACGATATGCTGGGACCACAGCACCCGCAGCAACA
GCCGCCACCTCCACCGGTGGCCTCTAGGCCTGAGCGCACGAAATCCATCT
ACACGCGGCCAATCGAGGATTTACAGCCAGCCATCATCCCAATGCCAGTG
GCGCCAGCAACCACGCCTGCAACGCCGCTGCAAATCATAGGACGCCAGGC
GGAATATCAGCACCAGCGCATCGCCAATGAATGCACAACATGCCACGACG
ACGCTGGACAAGAATAAAACCATGCCAATCTGTACCACCCGCACCAG
UFO07724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak-RJ | 4827 | CG10295-RJ | 563..1643 | 8..1085 | 5240 | 99.3 | Plus |
| Pak-RE | 3163 | CG10295-RE | 265..1345 | 8..1085 | 5240 | 99.3 | Plus |
| Pak-RB | 3168 | CG10295-RB | 270..1350 | 8..1085 | 5240 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6356747..6357331 | 487..1069 | 2715 | 99.1 | Plus |
| 3R | 32079331 | 3R | 6356433..6356611 | 324..502 | 850 | 98.3 | Plus |
| 3R | 32079331 | 3R | 6355020..6355180 | 8..168 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 6355265..6355421 | 168..324 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:26 has no hits.
UFO07724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:23 Download gff for
UFO07724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 263..1354 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:09 Download gff for
UFO07724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 263..1354 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:45 Download gff for
UFO07724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 264..1355 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:45 Download gff for
UFO07724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6355266..6355420 | 169..323 | 100 | -> | Plus |
| 3R | 6355014..6355180 | 1..168 | 97 | -> | Plus |
| 3R | 6356433..6356598 | 324..489 | 100 | -> | Plus |
| 3R | 6356750..6357343 | 490..1082 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:09 Download gff for
UFO07724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2180988..2181142 | 169..323 | 100 | -> | Plus |
| arm_3R | 2182155..2182320 | 324..489 | 100 | -> | Plus |
| arm_3R | 2180736..2180902 | 1..168 | 97 | -> | Plus |
| arm_3R | 2182472..2183065 | 490..1082 | 98 | | Plus |
