UFO07725.5prime Sequence
1143 bp (1034 high quality bases) assembled on 2011-07-14
> UFO07725.5prime
CAGTCGACATGGCCAGCAGCGCCGGAAGTGCGGCATCCGGATCCGTTGTT
CCCGGTGGCGGAGGTAGCGCCGCCTCCAGTTGTGCCACCATGGCCCTGTC
CACCGCCGGATCCGGTGGGCCGCCCGTGAACCACGCCCACGCCGTCTGCG
TGTGGGAGTTCGAGTCGCGCGGCAAGTGGCTGCCCTATTCGCCGGCGGTG
TCGCAGCACTTGGAACGCGCCCACGCCAAGAAACTGACGCGCGTCATGCT
GAGCGATGCGGATCCCAGCCTGGAGCAGTACTACGTCAACGTGCGCACAA
TGACCCAGGAATCGGAGGCGGAAACGGCCGGCTCCGGCCTGCTGACCATC
GGTGTTCGGCGCATGTTCTACGCACCCAGCTCGCCGGCGGGCAAGGGCAC
CAAGTGGGAGTGGTCGGGCGGCAGTGCCGATAGCAACAACGACTGGCGGC
CCTACAACATGCACGTCCAGTGCATCATCGAGGACGCCTGGGCGAGGGGC
GAACAAACCTTGGACCTGTGCAACACCCACATCGGCCTGCCGTACACCAT
TAACTTTTGCAATCTCACCCAGCTGCGCCAACCCAGCGGACCCATGCGCA
GCATTCGGCGTACCCAACAGGCGCCGTATCCCTTGGTGAAACTAACGCCA
CAACAGGCCAACCAACTCAAGTCGAATTCCGCCAGCGTGAGCAGCCAGTA
CAACACTCTACCCAAACTGGGAGACACCAAGAGCCTGCACAGAGTGCCCA
TGACCAGGCAACAGCACCCATTGCCCACCAGCCATCAAGTGCAGCAGCAG
CAGCATCAGCACCAGCATCAACAGCAGCAGCAGCAGCAACATCATCACCA
GCATCAGCAACAACAGCATCAGCAACAGCAGCAACATCAGATGCAGCACC
ATCAAATCCATCATCAGACGGCGCCCAGGAAGCCGCCCAAGAAGCACAGC
GAGATCTCCACCACCAATCTACGCCAGAATACTCAACACCTAAACATCTT
CAGCAGCAGCACTAAGCAACCATCGAACATGTCGACGCGGCCAGTGCCAG
TTCATCTCCTCATCGCTCGCTGCACCATGGCAACCATTCTGTCCAATGGC
AATTTCGCCACGCCGAAGAACATGCTGAACTGCCTCGAATGAA
UFO07725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dx-RA | 3828 | CG3929-RA | 415..1546 | 9..1138 | 5305 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6535520..6536114 | 497..1087 | 2670 | 98.5 | Plus |
| X | 23542271 | X | 6534413..6534902 | 9..498 | 2450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:12 has no hits.
UFO07725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:30 Download gff for
UFO07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 398..1539 | 1..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:42 Download gff for
UFO07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 409..1550 | 1..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:03 Download gff for
UFO07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 409..1550 | 1..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:03 Download gff for
UFO07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6534407..6534901 | 1..497 | 99 | -> | Plus |
| X | 6535521..6536167 | 498..1143 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:42 Download gff for
UFO07725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6428440..6428934 | 1..497 | 99 | -> | Plus |
| arm_X | 6429554..6430200 | 498..1143 | 97 | | Plus |
